Emil Sidky

Dr. Emil Sidky

orcid

Research Focus & Metrics

Academic Career Length

28Years (1999-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
13 August 2008 in Physics in Medicine & Biology
Verified
Journal Article
Closed access
ESEmil Sidky
Emil Sidky
XPXiaochuan Pan
Xiaochuan Pan
An iterative algorithm, based on recent work in compressive sensing, is developed for volume image reconstruction from a circular cone-beam scan. The algorithm minimizes the total variation (TV) of the image subject to the constraint that the estimated projection data is within a specified tolerance of the available data and that the values of the volume image are non-negative. The constraints are enforced by the use of projection onto convex sets (POCS) and the TV objective is minimized by steepest descent with an adaptive step-size. The algorithm is referred to as adaptive-steepest-descent-POCS (ASD-POCS). It appears to be robust against cone-beam artifacts, and may be particularly useful when the angular range is limited or when the angular sampling rate is low. The ASD-POCS algorithm is tested with the Defrise disk and jaw computerized phantoms. Some comparisons are performed with the POCS and expectation-maximization (EM) algorithms. Although the algorithm is presented in the context of circular cone-beam image reconstruction, it can also be applied to scanning geometries involving other x-ray source trajectories.

27 April 2012 in Physics in Medicine & Biology
Verified
Journal Article
Closed access
ESEmil Sidky
Emil Sidky
JJJakob H Jørgensen
Jakob H Jørgensen
XPXiaochuan Pan
Xiaochuan Pan
The primal-dual optimization algorithm developed in Chambolle and Pock (CP) (2011 J. Math. Imag. Vis. 40 1-26) is applied to various convex optimization problems of interest in computed tomography (CT) image reconstruction. This algorithm allows for rapid prototyping of optimization problems for the purpose of designing iterative image reconstruction algorithms for CT. The primal-dual algorithm is briefly summarized in this paper, and its potential for prototyping is demonstrated by explicitly deriving CP algorithm instances for many optimization problems relevant to CT. An example application modeling breast CT with low-intensity x-ray illumination is presented.

15 April 2016 in Physics in Medicine & Biology
Verified
Journal Article
Open access
PDF file
RBRina Foygel Barber
Rina Foygel Barber
ESEmil Sidky
Emil Sidky
TSTaly Gilat Schmidt
Taly Gilat Schmidt
XPXiaochuan Pan
Xiaochuan Pan
We develop a primal-dual algorithm that allows for one-step inversion of spectral CT transmission photon counts data to a basis map decomposition. The algorithm allows for image constraints to be enforced on the basis maps during the inversion. The derivation of the algorithm makes use of a local upper bounding quadratic approximation to generate descent steps for non-convex spectral CT data discrepancy terms, combined with a new convex-concave optimization algorithm. Convergence of the algorithm is demonstrated on simulated spectral CT data. Simulations with noise and anthropomorphic phantoms show examples of how to employ the constrained one-step algorithm for spectral CT data.

2 October 2009 in Medical Physics
Verified
Journal Article
Closed access
ESEmil Sidky
Emil Sidky
XPXiaochuan Pan
Xiaochuan Pan
IRIngrid S. Reiser
Ingrid S. Reiser
RNRobert M. Nishikawa
Robert M. Nishikawa
RMRichard H. Moore
Richard H. Moore
DKDaniel B. Kopans
Daniel B. Kopans

27 November 2012 in IEEE Transactions on Medical Imaging
Verified
Journal Article
Closed access
JJJakob S. Jorgensen
Jakob S. Jorgensen
ESEmil Sidky
Emil Sidky
XPXiaochuan Pan
Xiaochuan Pan
Iterative image reconstruction with sparsity-exploiting methods, such as total variation (TV) minimization, investigated in compressive sensing claim potentially large reductions in sampling requirements. Quantifying this claim for computed tomography (CT) is nontrivial, because both full sampling in the discrete-to-discrete imaging model and the reduction in sampling admitted by sparsity-exploiting methods are ill-defined. The present article proposes definitions of full sampling by introducing four sufficient-sampling conditions (SSCs). The SSCs are based on the condition number of the system matrix of a linear imaging model and address invertibility and stability. In the example application of breast CT, the SSCs are used as reference points of full sampling for quantifying the undersampling admitted by reconstruction through TV-minimization. In numerical simulations, factors affecting admissible undersampling are studied. Differences between few-view and few-detector bin reconstruction as well as a relation between object sparsity and admitted undersampling are quantified.

1 January 2014 in IEEE Journal of Translational Engineering in Health and Medicine
Verified
Journal Article
Open access
ESEmil Sidky
Emil Sidky
RCRick Chartrand
Rick Chartrand
JBJohn M. Boone
John M. Boone
XPXiaochuan Pan
Xiaochuan Pan
Exploiting sparsity in the image gradient magnitude has proved to be an effective means for reducing the sampling rate in the projection view angle in computed tomography (CT). Most of the image reconstruction algorithms, developed for this purpose, solve a nonsmooth convex optimization problem involving the image total variation (TV). The TV seminorm is the $\ell_{1}$ norm of the image gradient magnitude, and reducing the $\ell_{1}$ norm is known to encourage sparsity in its argument. Recently, there has been interest in employing nonconvex $\ell_{p}$ quasinorms with $0<p<1$ for sparsity exploiting image reconstruction, which is potentially more effective than $\ell_{1}$ because nonconvex $\ell_{p}$ is closer to $\ell_{0}$ —a direct measure of sparsity. This paper develops algorithms for constrained minimization of the total $p$ -variation $({\rm T}p{\rm V})$ , $\ell_{p}$ of the image gradient. Use of the algorithms is illustrated in the context of breast CT—an imaging modality that is still in the research phase and for which constraints on X-ray dose are extremely tight. The ${\rm T}p{\rm V}$ -based image reconstruction algorithms are demonstrated on computer simulated data for exploiting gradient magnitude sparsity to reduce the projection view angle sampling. The proposed algorithms are applied to projection data from a realistic breast CT simulation, where the total X-ray dose is equivalent to two-view digital mammography. Following the simulation survey, the algorithms are then demonstrated on a clinical breast CT data set.