Toomey Lola

Dr. Toomey Lola

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Research Focus & Metrics

Academic Career Length

12Years (2015-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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17 November 2017 in Marine Biodiversity
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Daniela ZeppilliDaniela Zeppilli
Daniela Zeppilli
DLDaniel Leduc
Daniel Leduc
CFChristophe Fontanier
Christophe Fontanier
Diego FontanetoDiego Fontaneto
Diego Fontaneto
SFSandra Fuchs
Sandra Fuchs
DFDavid Fernandes
David Fernandes
Extreme marine environments cover more than 50% of the Earth’s surface and offer many opportunities for investigating the biological responses and adaptations of organisms to stressful life conditions. Extreme marine environments are sometimes associated with ephemeral and unstable ecosystems, but can host abundant, often endemic and well-adapted meiofaunal species. In this review, we present an integrated view of the biodiversity, ecology and physiological responses of marine meiofauna inhabiting several extreme marine environments (mangroves, submarine caves, Polar ecosystems, hypersaline areas, hypoxic/anoxic environments, hydrothermal vents, cold seeps, carcasses/sunken woods, deep-sea canyons, deep hypersaline anoxic basins [DHABs] and hadal zones). Foraminiferans, nematodes and copepods are abundant in almost all of these habitats and are dominant in deep-sea ecosystems. The presence and dominance of some other taxa that are normally less common may be typical of certain extreme conditions. Kinorhynchs are particularly well adapted to cold seeps and other environments that experience drastic changes in salinity, rotifers are well represented in polar ecosystems and loriciferans seem to be the only metazoan able to survive multiple stressors in DHABs. As well as natural processes, human activities may generate stressful conditions, including deoxygenation, acidification and rises in temperature. The behaviour and physiology of different meiofaunal taxa, such as some foraminiferans, nematode and copepod species, can provide vital information on how organisms may respond to these challenges and can provide a warning signal of anthropogenic impacts. From an evolutionary perspective, the discovery of new meiofauna taxa from extreme environments very often sheds light on phylogenetic relationships, while understanding how meiofaunal organisms are able to survive or even flourish in these conditions can explain evolutionary pathways. Finally, there are multiple potential economic benefits to be gained from ecological, biological, physiological and evolutionary studies of meiofauna in extreme environments. Despite all the advantages offered by meiofauna studies from extreme environments, there is still an urgent need to foster meiofauna research in terms of composition, ecology, biology and physiology focusing on extreme environments.

18 July 2024 in BMC Veterinary Research
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SASébastien Alfonso
Sébastien Alfonso
EFEleonora Fiocchi
Eleonora Fiocchi
TLToomey Lola
Toomey Lola
MBMarilena Boscarato
Marilena Boscarato
AMAmedeo Manfrin
Amedeo Manfrin
Pierluigi CarbonaraPierluigi Carbonara
Pierluigi Carbonara
Total protein levels in fish are widely used in health and welfare studies, providing a simple and accessible measure. However, the multifaceted role of blood proteins makes it sometimes challenging to link total protein content to specific health issues, while specific protein fractions may offer more precise insights into fish biology and health, particularly in farmed fish species where such data is often lacking. Data were gathered from two experiments involving Dicentrarchus labrax and Sparus aurata, key species in European marine aquaculture. The aim was (1) to assess how different globulin fractions contribute to total protein content in blood and (2) how these contributions vary across different sampling times in healthy animals. In D. labrax, the beta1 globulin fraction emerged as the major contributor (34.16%), followed by albumin and alpha2 globulins (18.24% and 16.41%, respectively). In contrast, pre-albumins and alpha1 fractions had the least contribution (5.49% and 7.71%). S. aurata exhibited albumin as the primary contributor (23.39%), followed by beta1 and alpha2 globulins (19.71% and 19.15%, respectively), with gamma and alpha1 fractions contributing the least (5.34% and 8.63%). Notably, the study revealed relatively stable contributions of globulin fractions to total proteins within both species, albeit with minor variations over time, potentially linked to environmental and individual factors. Furthermore, larger fish displayed higher total protein levels. This research underscores the need for further investigation into the diverse factors influencing globulin contributions to total proteins, ultimately enhancing health and welfare monitoring for farmed fish species.

14 July 2020 in Scientific Reports
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Journal Article
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TLToomey Lola
Toomey Lola
TLThomas Lecocq
Thomas Lecocq
ZBZoltán Bokor
Zoltán Bokor
LELaurent Espinat
Laurent Espinat
ÁFÁrpád Ferincz
Árpád Ferincz
PFPascal Fontaine
Pascal Fontaine
In agriculture, diversifying production implies picking up, in the wild biodiversity, species or populations that can be domesticated and fruitfully produced. Two alternative approaches are available to highlight wild candidate(s) with high suitability for aquaculture: the single-trait (i.e. considering a single phenotypic trait and, thus, a single biological function) and multi-trait (i.e. considering multiple phenotypic traits involved in several biological functions) approaches. Although the former is the traditional and the simplest method, the latter could be theoretically more efficient. However, an explicit comparison of advantages and pitfalls between these approaches is lacking to date in aquaculture. Here, we compared the two approaches to identify best candidate(s) between four wild allopatric populations of Perca fluviatilis in standardised aquaculture conditions. Our results showed that the single-trait approach can (1) miss key divergences between populations and (2) highlight different best candidate(s) depending on the trait considered. In contrast, the multi-trait approach allowed identifying the population with the highest domestication potential thanks to several congruent lines of evidence. Nevertheless, such an integrative assessment is achieved with a far more time-consuming and expensive study. Therefore, improvements and rationalisations will be needed to make the multi-trait approach a promising way in the aquaculture development.

1 May 2020 in Reviews in Aquaculture
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TLToomey Lola
Toomey Lola
PFPascal Fontaine
Pascal Fontaine
TLThomas Lecocq
Thomas Lecocq

29 October 2015 in Marine Biology Research
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Journal Article
Closed access
JJJean-Luc Jung
Jean-Luc Jung
WMWim C. Mullié
Wim C. Mullié
KWKoen Van Waerebeek
Koen Van Waerebeek
MWMoulaye Mohamed Wagne
Moulaye Mohamed Wagne
ABAbdellahi Samba Ould Bilal
Abdellahi Samba Ould Bilal
FMFrédéric Marret
Frédéric Marret
The surveillance of marine mammal strandings within the framework of a biomonitoring scheme for the Mauritanian coast led to the discovery in 2013 of a 3.98 m long, juvenile rorqual Balaenoptera sp. in an advanced state of decomposition near Chott Boul (16°32.488′N, 016°27.0317′W). Photographs and skin samples were taken, but the specimen could not be collected. Based on limited morphological evidence, only Balaenoptera edeni and B. omurai were plausible. Sequences of three mtDNA regions, i.e. parts of the cox1 and the cytb genes as well as the D-loop, for a total of 2636 bp (> 16% of the mitogenome) identified the specimen as an Omura's whale, B. omurai, the first record in the Atlantic Ocean and at least 11,400 km away from its closest known range in the SW Indian Ocean (Madagascar). The question of whether the specimen is a vagrant or belongs to an unrecognized Atlantic population is discussed. Advection by currents or transport on a ship's bow bulb following collision are discarded. Circumstances (juvenile status, great distance from Indo-Pacific, necessary inter-oceanic passage through cold temperate waters) may slightly favour the hypothesis that B. omurai, if rare, could be autochthonous in the Atlantic. Beach surveys remain a useful tool to assess trends in cetacean species composition, to detect unusual mortality events and to help assess the impacts of anthropogenic activities. This is particularly applicable to remote areas where the marine mammal fauna is poorly known and where fisheries effort is high, such as the Mauritanian coast.

19 May 2016 in Antarctic Science
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Journal Article
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TLToomey Lola
Toomey Lola
DWDirk Welsford
Dirk Welsford
SASharon A. Appleyard
Sharon A. Appleyard
APAndrea Polanowski
Andrea Polanowski
CFCassandra Faux
Cassandra Faux
SJSimon Jarman
Simon Jarman
The Patagonian toothfish, Dissostichus eleginoides, is a valuable fishery species and has a discontinuous distribution across the Southern Ocean. Identification of the genetic stock structure of toothfish would allow evaluation of the suitability of the spatial scale at which fisheries management operates. Genetic subdivision seems likely given the species distribution. Population genetics studies of this species have been performed; however, they have been limited by sample size, spatial coverage and/or the type of markers investigated. As a potential solution, we developed methods for extracting toothfish DNA from otoliths that are available in large numbers from collections held at several research institutes. Genetic differentiation between the three oceanic sectors was investigated. Four mitochondrial and four nuclear markers with multiple single nucleotide polymorphisms were sequenced by high throughput sequencing for samples from six locations. Genetic differentiation was found between three sectors with nuclear markers. However, only the Pacific sector was differentiated from other sectors with mitochondrial markers. This study demonstrates the usefulness of otolith DNA as a means of increasing sample sizes for population genetics research of fish. Additionally, the combination of nuclear and mitochondrial markers may allow insight into how the observed differences in movements between male and female toothfish impact population structure.