Antoine Fages

Dr. Antoine Fages


Research Focus & Metrics

Academic Career Length

10Years (2017-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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6 April 2018 in Science
Verified
Journal Article
Closed access
PDF file
CGCharleen Gaunitz
Charleen Gaunitz
AFAntoine Fages
Antoine Fages
KHKristian Hanghøj
Kristian Hanghøj
AAAnders Albrechtsen
Anders Albrechtsen
NKNaveed Khan
Naveed Khan
LOLudovic Orlando
Ludovic Orlando
Revisiting the origins of modern horses: The domestication of horses was very important in the history of humankind. However, the ancestry of modern horses and the location and timing of their emergence remain unclear. Gaunitz et al. generated 42 ancient-horse genomes. Their source samples included the Botai archaeological site in Central Asia, considered to include the earliest domesticated horses. Unexpectedly, Botai horses were the ancestors not of modern domestic horses, but rather of modern Przewalski's horses. Thus, in contrast to current thinking on horse domestication, modern horses may have been domesticated in other, more Western, centers of origin. Science , this issue p. 111

28 April 2017 in Science
Verified
Journal Article
Closed access
PDF file
Pablo LibradoPablo Librado
Pablo Librado
CGCristina Gamba
Cristina Gamba
CGCharleen Gaunitz
Charleen Gaunitz
CSClio Der Sarkissian
Clio Der Sarkissian
MPMélanie Pruvost
Mélanie Pruvost
LOLudovic Orlando
Ludovic Orlando
Ancient genomics of horse domestication: The domestication of the horse was a seminal event in human cultural evolution. Libradoet al.obtained genome sequences from 14 horses from the Bronze and Iron Ages, about 2000 to 4000 years ago, soon after domestication. They identified variants determining coat color and genes selected during the domestication process. They could also see evidence of admixture with archaic horses and the demography of the domestication process, which included the accumulation of deleterious variants. The horse appears to have undergone a different type of domestication process than animals that were domesticated simply for food.Science, this issue p.442

9 September 2022 in Science
Verified
Journal Article
Closed access
ETEvelyn T. Todd
Evelyn T. Todd
LTLaure Tonasso-Calvière
Laure Tonasso-Calvière
LCLoreleï Chauvey
Loreleï Chauvey
SSStéphanie Schiavinato
Stéphanie Schiavinato
AFAntoine Fages
Antoine Fages
LOLudovic Orlando
Ludovic Orlando
Donkeys transformed human history as essential beasts of burden for long-distance movement, especially across semi-arid and upland environments. They remain insufficiently studied despite globally expanding and providing key support to low- to middle-income communities. To elucidate their domestication history, we constructed a comprehensive genome panel of 207 modern and 31 ancient donkeys, as well as 15 wild equids. We found a strong phylogeographic structure in modern donkeys that supports a single domestication in Africa ~5000 BCE, followed by further expansions in this continent and Eurasia and ultimately returning to Africa. We uncover a previously unknown genetic lineage in the Levant ~200 BCE, which contributed increasing ancestry toward Asia. Donkey management involved inbreeding and the production of giant bloodlines at a time when mules were essential to the Roman economy and military.

31 March 2023 in Science
Verified
Journal Article
Closed access
WTWilliam Timothy Treal Taylor
William Timothy Treal Taylor
Pablo LibradoPablo Librado
Pablo Librado
CHChief Joseph American Horse
Chief Joseph American Horse
CGCarlton Shield Chief Gover
Carlton Shield Chief Gover
JAJimmy Arterberry
Jimmy Arterberry
LOLudovic Orlando
Ludovic Orlando
The horse is central to many Indigenous cultures across the American Southwest and the Great Plains. However, when and how horses were first integrated into Indigenous lifeways remain contentious, with extant models derived largely from colonial records. We conducted an interdisciplinary study of an assemblage of historic archaeological horse remains, integrating genomic, isotopic, radiocarbon, and paleopathological evidence. Archaeological and modern North American horses show strong Iberian genetic affinities, with later influx from British sources, but no Viking proximity. Horses rapidly spread from the south into the northern Rockies and central plains by the first half of the 17th century CE, likely through Indigenous exchange networks. They were deeply integrated into Indigenous societies before the arrival of 18th-century European observers, as reflected in herd management, ceremonial practices, and culture.

26 April 2024 in Science
Verified
Journal Article
Closed access
CSCarolin Sommer-Trembo
Carolin Sommer-Trembo
MSM. Emília Santos
M. Emília Santos
BCBethan Clark
Bethan Clark
MWMarco Werner
Marco Werner
AFAntoine Fages
Antoine Fages
WSWalter Salzburger
Walter Salzburger
Behavior is critical for animal survival and reproduction, and possibly for diversification and evolutionary radiation. However, the genetics behind adaptive variation in behavior are poorly understood. In this work, we examined a fundamental and widespread behavioral trait, exploratory behavior, in one of the largest adaptive radiations on Earth, the cichlid fishes of Lake Tanganyika. By integrating quantitative behavioral data from 57 cichlid species (702 wild-caught individuals) with high-resolution ecomorphological and genomic information, we show that exploratory behavior is linked to macrohabitat niche adaptations in Tanganyikan cichlids. Furthermore, we uncovered a correlation between the genotypes at a single-nucleotide polymorphism upstream of the AMPA glutamate-receptor regulatory gene cacng5b and variation in exploratory tendency. We validated this association using behavioral predictions with a neural network approach and CRISPR-Cas9 genome editing.

1 November 2020 in Journal of Archaeological Science
Verified
Journal Article
Open access
JGJosé D. Granado
José D. Granado
NDNadine Dill
Nadine Dill
CGCharleen Gaunitz
Charleen Gaunitz
AFAntoine Fages
Antoine Fages
NKNaveed Khan
Naveed Khan
ASAngela Schlumbaum
Angela Schlumbaum