Schistosomiasis remains a public health major problem and little is known in many areas, mainly in Sub-Saharan Africa To assess the burden and risk factors of schistosomiasis and intestinal parasitic helminthes in the children of Cubal, Angola, and to compare different diagnostic approaches for urinary schistosomiasis under field conditions. A cross-sectional study was conducted. Urine and faeces samples of school children were microscopically studied. A random sample of children was obtained from an alphabetically arranged list of children, taking one of two children. Urine dipstick, colorimetric test and macrohaematuria were considered as indirect diagnostic methods and compared to direct urine examination. Possible risk factors for the infection were sex, age, distance to the river and previous treatment with praziquantel; the assessment was performed using Chi-square test. A total of 785 (61.18%) children showed S. haematobium eggs in urine; children living within 500 meters from the river had a higher odds for infection: Odds ratio 1.97 (1.45–2.7 CI 95%); urine dipstick showed sensitivity of 96% and specificity of 61.3%, with a positive predictive value; colorimetric test showed sensitivity of 52.5%, specificity of 74.6% and a positive predictive value of 77%. Proteinuria was present in 653 (51.1%) children, being more frequent in children with S. haematobium in urine (75.2%); 32 of 191 stool samples (16%) showed the presence of other intestinal parasites and 8 (4%) for S. haematobium. Prevalence of urinary schistosomiasis in our study area is much higher than the national average, considering it as a high-risk community. Proximity to a source of water was a risk factor for the infection. Indirect tests, as urine dipstick and colorimetric test, were useful tools for diagnosis, due to ease of use and low cost. Proteinuria was a common finding, probably showing an early structural damage due to schistosomiasis in this group of children. Schistosomiasis is a parasitic disease that affects both the individual and the community as a whole. Its transmission and life cycle depend on non-safe water, as infection is acquired bathing in fresh water. As in many neglected diseases, information about it is scarce in many areas, mainly in Sub-Saharan Africa. It is the case in Angola, where a prolonged civil war has hampered development and research for many years. This paper highlights the epidemiology of the disease in Cubal, main town of a rural area in central Angola. It shows a very high prevalence of urinary schistosomiasis in the school-age population of the area; the risk is higher among the children living closer to one source of water. This population must be considered as a high-risk community for the development of complications. We advocate for the use of indirect tests for diagnosis, as urine dipstick and colorimetric test, due to their easiness of use and low price. At the same time, it relates the presence of the disease with signs of severity that are usually observed at an older age, suggesting that prevention must be initiated as soon as possible. Overall, this paper will provide the research and medical community with essential data for future intervention strategies to manage schistosomiasis in the region.