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Some mucoromycotan fungi establish symbiotic associations with endohyphal bacteria. Here, the genome of Entomortierella parvispora E1425 (synonymously known as Mortierella parvispora E1425), which harbors a cultured Burkholderiaceae -related endobacterium (BRE) designated Mycoavidus sp. Strain B2-EB, was sequenced. We provide genomic information to elucidate fungal-BRE symbiotic features.

Paddy fields are a major source of atmospheric methane, a greenhouse gas produced by methanogens and consumed by methanotrophs in flooded soil. The inoculation of rice seeds with the bacterium Azoarcus sp. KH32C alters the rice root-associated soil bacterial community composition. The present study investigated the effects of KH32C-inoculated rice cultivation on soil methanogens and methanotrophs involved in methane emissions from a rice paddy field. KH32C-inoculated and non-inoculated rice (cv. Nipponbare) were cultivated in a Japanese rice paddy with and without nitrogen fertilizer. Measurements of methane emissions and soil solution chemical properties revealed increases in methane flux over the waterlogged period with elevations in the concentrations of dissolved methane, dissolved organic carbon, and ferrous iron, which is an indicator of soil reduction levels. Reverse transcription quantitative PCR and amplicon sequencing were used to assess the transcription of the methyl-coenzyme M reductase gene (mcrA) from methanogens and the particulate methane monooxygenase gene (pmoA) from methanotrophs in paddy soil. The results obtained showed not only the transcript copy numbers, but also the compositions of mcrA and pmoA transcripts were related to methane flux. KH32C-inoculated rice cultivation recruited soil methanogens and methanotrophs that suppressed high methane synthesis, increased methane consumption, and decreased methane emissions by 23.5 and 17.2% under non-fertilized and nitrogen-fertilized conditions, respectively, while maintaining rice grain yield. The present study demonstrated the mitigation of paddy field methane emissions arising from the use of KH32C in rice cultivation due to its influence on the compositions of soil methanogen and methanotroph populations.

No tillage (NT) fosters carbon (C) sequestration, increases soil organic matter (SOM) stock, and improves soil health. However, its effect on SOM accumulation in Andosol, which has high OM stabilization characteristics due to its specific mineral properties, remains unclear. In this study, we evaluated the effect of NT on SOM content and its distribution by the physical fractionation method and assessed the quality of accumulated SOM in each fraction. We collected soil samples at 0–2.5, 2.5–7.5, and 7.5–15 cm depths from NT and conventional tillage (CT) plots in a long-term (19 years) field experiment of Andosols in Ibaraki, Japan. The soil samples were separated into light fraction (LF), coarse-POM (cPOM: 0.25–2 mm), fine-POM (fPOM: 0.053–0.25 mm), and silt + clay (mOM: <0.053 mm). The C, nitrogen (N), and organic phosphorus (Po) contents of each fraction were analyzed. The C content of cPOM and fPOM in NT at 0–7.5 cm was higher than in CT, while there was no clear difference in the mOM fraction or deeper layer (7.5–15 cm). NT increased the C, N, and Po contents in the labile POM fractions at the surface layers but did not increase the stable fraction or change the quality.

Excessive input of nitrogen fertilizer causes nitrogen pollution in aquatic environments. Utilizing microbial inoculants seems to be effective in decreasing the extent of nitrogen fertilizer application. Genome sequencing analysis of Azoarcus sp. strain KH32C, which was isolated from a paddy-upland rotation paddy field in Japan, showed that the strain may interact with plants. In this study, we examined the effect of inoculation of rice seeds with strain KH32C as a bacterial inoculant in paddy fields without nitrogen fertilization. Rice of three cultivars inoculated with strain KH32C were cultivated in paddy fields with different soil carbon and nitrogen levels. We investigated the growth rate of rice plants and the elemental composition of brown rice. In addition, the bacterial community structures in the rice root-associated soil were examined using molecular genetic analysis. KH32C inoculation resulted in an increase in the rice plant growth rate in the early growth phase with cultivar Nipponbare. Elemental composition analysis showed that the zinc concentration in brown rice of Nipponbare was increased by KH32C inoculation. KH32C inoculation affected the bacterial community in Nipponbare root-associated soil. The community of potential plant growth-promoting bacteria, the majority of which were in the class Alphaproteobacteria, had relatively high abundance in the early growth stage after KH32C inoculation. Our results indicated that strain KH32C can be utilized as a bacterial inoculant with the effect of promoting rice growth and enhancing the zinc content of rice grains in low nitrogen input paddy fields.

The cyanobacterium semi-filamentous multicellular strain ABRG5-3 undergoes cell lysis as a unique feature that occurs due to growth condition changes from normal cultivation with shaking to static cultivation without shaking in liquid culture (Nishizawa et al., 2010). Microscopic observation and energy dispersive X-ray spectrometer (EDX) analysis have revealed that lysis is involved in the accumulation of polyphosphate compounds and the disintegration of thylakoid membranes in cells. Static cultivation, dark or red light exposure, and temperature (22 to 42 °C) conditions were found to be effective factors for the induction of lysis. Moreover, stress induced by salts, osmotic pressure with sucrose, and the depletion of nitrogen or phosphate in cultures also induced ABRG5-3 cell lysis. Based on these results, we discuss lysis and its utilization in the biotechnology industry.