Chrysanthi Charalampous

Mrs. Chrysanthi Charalampous


Research Focus & Metrics

Academic Career Length

5Years (2022-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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21 January 2023 in Cells
Verified
Journal Article
Open access
PDF file
Vasileios L. ZogopoulosVasileios L. Zogopoulos
Vasileios L. Zogopoulos
AMApostolos Malatras
Apostolos Malatras
Konstantinos KyriakidisKonstantinos Kyriakidis
Konstantinos Kyriakidis
CCChrysanthi Charalampous
Chrysanthi Charalampous
EMevanthia makrygianni
evanthia makrygianni
Ioannis MichalopoulosIoannis Michalopoulos
Ioannis Michalopoulos
Genes with similar expression patterns in a set of diverse samples may be considered coexpressed. Human Gene Coexpression Analysis 2.0 (HGCA2.0) is a webtool which studies the global coexpression landscape of human genes. The website is based on the hierarchical clustering of 55,431 Homo sapiens genes based on a large-scale coexpression analysis of 3500 GTEx bulk RNA-Seq samples of healthy individuals, which were selected as the best representative samples of each tissue type. HGCA2.0 presents subclades of coexpressed genes to a gene of interest, and performs various built-in gene term enrichment analyses on the coexpressed genes, including gene ontologies, biological pathways, protein families, and diseases, while also being unique in revealing enriched transcription factors driving coexpression. HGCA2.0 has been successful in identifying not only genes with ubiquitous expression patterns, but also tissue-specific genes. Benchmarking showed that HGCA2.0 belongs to the top performing coexpression webtools, as shown by STRING analysis. HGCA2.0 creates working hypotheses for the discovery of gene partners or common biological processes that can be experimentally validated. It offers a simple and intuitive website design and user interface, as well as an API endpoint.

21 June 2022 in Cellular and Molecular Life Sciences
Verified
Journal Article
Closed access
PDF file
MPMaria A. Paschou
Maria A. Paschou
PPPanagiota Papazafiri
Panagiota Papazafiri
CCChrysanthi Charalampous
Chrysanthi Charalampous
MZMichael Zachariadis
Michael Zachariadis
SDSkarlatos Dedos
Skarlatos Dedos
Epaminondas DoxakisEpaminondas Doxakis
Epaminondas Doxakis