Access to large sources of quality water for irrigation is fundamental to the hygienic cultivation of fresh produce. However, due to factors such as contamination of water bodies, access to clean uncontaminated water is fast becoming an ever increasing global challenge. The unavailability of quality source water increases the risk of contamination of fresh produce with human pathogenic microorganisms, which may compromise public health. Over the past few years, there has been a decline in the microbiological quality of surface water and other sources used for irrigation. This is mainly due to upstream fecal contamination. Therefore, the assessment and subsequent suitability of alternative water sources for irrigation such as roof-harvested rainwater should be considered. Contrasting views regarding the quality of roof-harvested rainwater (RHRW) have been published. Pathogens such as Salmonella and Campylobacter species and Listeria monocytogenes have been reported in RHRW. Leafy green vegetables such as cabbage, spinach, and lettuce are produced across a wide range of farming systems from regulated formal (commercial farms) to informal (small-scale and homestead gardens) setups. This review will discuss global water challenges associated with irrigation water, microbial quality of source water for irrigation, crop contamination, and pathogen detection and characterization methodologies.

Foodborne disease outbreaks linked to contaminated irrigation water and fresh produce are a public health concern. The presence of Escherichia coli isolates from irrigation water and leafy green vegetables in different food production systems (large commercial farms, small-scale farms, and homestead gardens) was investigated. The prevalence of antibiotic resistance and virulence in these isolates was further assessed, and links between water source and irrigated crops were identified using antimicrobial and genotypic analyses. Presumptive E. coli isolates were identified by matrix-assisted laser desorption ionization time-of-flight mass spectroscopy, and identities were confirmed by PCR using the uidA gene. Antimicrobial susceptibility was evaluated with the Kirby Bauer disk diffusion test; the presence of virulence genes was determined with enterobacterial repetitive intergenic consensus PCR assays. Of the 130 E. coli isolates from water (n =60) and leafy green vegetables (n =70), 19 (14.6%) wer...

The study aimed at assessing the microbiological quality and suitability of roof-harvested rainwater (RHRW) for crop irrigation and domestic use. In total, 80 rainwater tanks (246 samples) across three rural villages (Ga-Molepane, Jericho and Luthngele) were visited. Culture-based techniques were used to isolate bacterial microbes and identities were confirmed using matrix-assisted laser desorption/ionization time of flight (MALDI-TOF-MS). Uncultured fungal populations were also identified using pyrosequencing. Salmonella spp. (3%), Listeria monocytogenes (22%), total coliforms (57.7%), Escherichia coli (30.5%), Enterococcus spp. (48.8%), Pseudomonas spp. (21.5%) were detected in RHRW samples after rainfall. Fungal sequences belonging to species known to cause fever, coughing and shortness of breath in humans (Cryptococcus spp.) were identified. This study indicates that RHRW quality can be affected by external factors such as faecal material and debris on rooftops. The use of untreated RHRW could pose a potential health risk if used for irrigation of crops or domestic use, especially in the case of a relative high population of immunocompromised individuals. This study does not dispute the fact that RHRW is an alternative irrigation water source but it recommends treatment before use for domestic purposes or for watering crops.