Alexander Menke

Mr. Alexander Menke

orcid

Research Focus & Metrics

Academic Career Length

4Years (2023-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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23 January 2023 in Molecules
Verified
Journal Article
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AMAlexander Menke
Alexander Menke
NHNicholas C. Henderson
Nicholas C. Henderson
LKLola C. Kouretas
Lola C. Kouretas
AEAnne N. Estenson
Anne N. Estenson
BJBenjamin G Janesko
Benjamin G Janesko
ESEric Simanek
Eric Simanek
In the absence of preorganization, macrocyclization reactions are often plagued by oligomeric and polymeric side products. Here, a network of hydrogen bonds was identified as the basis for quantitative yields of macrocycles derived from the dimerization of monomers. Oligomers and polymers were not observed. Macrocyclization, the result of the formation of two hydrazones, was hypothesized to proceed in two steps. After condensation to yield the monohydrazone, a network of hydrogen bonds formed to preorganize the terminal acetal and hydrazine groups for cyclization. Experimental evidence for preorganization derived from macrocycles and acyclic models. Solution NMR spectroscopy and single-crystal X-ray diffraction revealed that the macrocycles isolated from the cyclization reaction were protonated twice. These protons contributed to an intramolecular network of hydrogen bonds that engaged distant carbonyl groups to realize a long-range order. DFT calculations showed that this network of hydrogen bonds contributed 8.7 kcal/mol to stability. Acyclic models recapitulated this network in solution. Condensation of an acetal and a triazinyl hydrazine, which adopted a number of conformational isomers, yielded a hydrazone that adopted a favored rotamer conformation in solution. The critical hydrogen-bonded proton was also evident. DFT calculations of acyclic models showed that the rotamers were isoenergetic when deprotonated. Upon protonation, however, energies diverged with one low-energy rotamer adopting the conformation observed in the macrocycle. This conformation anchored the network of hydrogen bonds of the intermediate. Computation revealed that the hydrogen-bonded network in the acyclic intermediate contributed up to 14 kcal/mol of stability and preorganized the acetal and hydrazine for cyclization.

13 February 2023 in The Journal of Organic Chemistry
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Journal Article
Closed access
AMAlexander Menke
Alexander Menke
CGCamryn J. Gloor
Camryn J. Gloor
LCLiam E. Claton
Liam E. Claton
MMMagy A. Mekhail
Magy A. Mekhail
HPHongjun Pan
Hongjun Pan
ESEric Simanek
Eric Simanek

7 July 2023 in Chemistry – A European Journal
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Journal Article
Open access
AMAlexander Menke
Alexander Menke
JMJoseph M. Mellberg
Joseph M. Mellberg
HPHongjun Pan
Hongjun Pan
JRJoseph H. Reibenspies
Joseph H. Reibenspies
BJBenjamin G Janesko
Benjamin G Janesko
ESEric Simanek
Eric Simanek
Hinge motion is observed in macrocyclic, mortise‐type molecular hinges using variable temperature NMR spectroscopy. The data is consistent with dynamic hinging from a folded‐to‐extended‐to‐folded enantiomeric state. Crystallographic and solution structures of the folded states are reported. Chemical shift predictions derived from crystallographic data corroborate fully revolute hinge motion. The rate of hinging is affected by steric congestion at the hinge axis. A macrocycle containing glycine, 1, hinges faster than one comprising aminoisobutyric acid, 2. The free energies of activation, ΔG≠, for 1 and 2 were determined to be 13.3±0.3 kcal/mol and 16.3±0.3 kcal/mol, respectively. This barrier is largely independent of solvent across those surveyed (CD3OD, CD3CN, DMSO‐d6, pyridine‐d5, D2O). Experiment and computation predict energy barriers that are consistent with disruption of an intramolecular network of hydrogen bonds. DFT calculations reveal a pathway for hinge motion.

8 September 2023 in ACS Medicinal Chemistry Letters
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Journal Article
Closed access
CPCasey J. Patterson-Gardner
Casey J. Patterson-Gardner
GPGretchen M. Pavelich
Gretchen M. Pavelich
ACApril T. Cannon
April T. Cannon
AMAlexander Menke
Alexander Menke
ESEric Simanek
Eric Simanek

1 February 2024 in The Journal of Organic Chemistry
Verified
Journal Article
Closed access
AMAlexander Menke
Alexander Menke
ZJZachary P. Jacobus
Zachary P. Jacobus
LCLiam E. Claton
Liam E. Claton
OAOnofrio Annunziata
Onofrio Annunziata
RCRiccardo Capelli
Riccardo Capelli
ESEric Simanek
Eric Simanek

2 June 2025 in ACS Medicinal Chemistry Letters
Verified
Journal Article
Closed access
GSGretel A. Stokes
Gretel A. Stokes
CPCasey J. Patterson-Gardner
Casey J. Patterson-Gardner
AEAlexander M. Engstrom
Alexander M. Engstrom
AMAlexander Menke
Alexander Menke
KRK. Harsha Vardhan Reddy
K. Harsha Vardhan Reddy
ESEric Simanek
Eric Simanek