John McDonald

Dr. John McDonald

orcid

Research Focus & Metrics

Academic Career Length

27Years (2000-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 November 2020 in Cell
Verified
Journal Article
Closed access
WSWillian A. da Silveira
Willian A. da Silveira
HFHossein Fazelinia
Hossein Fazelinia
SRSara Brin Rosenthal
Sara Brin Rosenthal
Evagelia C LaiakisEvagelia C Laiakis
Evagelia C Laiakis
MKMan Seok Kim
Man Seok Kim
ABAfshin Beheshti
Afshin Beheshti

30 September 2021 in Cell Reports
Verified
Journal Article
Open access
JMJohn McDonald
John McDonald
Francisco J. EnguitaFrancisco J. Enguita
Francisco J. Enguita
DTDeanne Taylor
Deanne Taylor
RGRobert J. Griffin
Robert J. Griffin
WPWaldemar Priebe
Waldemar Priebe
ABAfshin Beheshti
Afshin Beheshti
MicroRNAs (miRNAs) are small non-coding RNAs involved in post-transcriptional gene regulation that have a major impact on many diseases and provide an exciting avenue toward antiviral therapeutics. From patient transcriptomic data, we determined that a circulating miRNA, miR-2392, is directly involved with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) machinery during host infection. Specifically, we show that miR-2392 is key in driving downstream suppression of mitochondrial gene expression, increasing inflammation, glycolysis, and hypoxia, as well as promoting many symptoms associated with coronavirus disease 2019 (COVID-19) infection. We demonstrate that miR-2392 is present in the blood and urine of patients positive for COVID-19 but is not present in patients negative for COVID-19. These findings indicate the potential for developing a minimally invasive COVID-19 detection method. Lastly, using in vitro human and in vivo hamster models, we design a miRNA-based antiviral therapeutic that targets miR-2392, significantly reduces SARS-CoV-2 viability in hamsters, and may potentially inhibit a COVID-19 disease state in humans.

25 November 2020 in Cell Reports
Verified
Journal Article
Open access
SMSherina Malkani
Sherina Malkani
CCChristopher R. Chin
Christopher R. Chin
ECEgle Cekanaviciute
Egle Cekanaviciute
MMMarie Mortreux
Marie Mortreux
HOHazeem Okinula
Hazeem Okinula
ABAfshin Beheshti
Afshin Beheshti
We have identified and validated a spaceflight-associated microRNA (miRNA) signature that is shared by rodents and humans in response to simulated, short-duration and long-duration spaceflight. Previous studies have identified miRNAs that regulate rodent responses to spaceflight in low-Earth orbit, and we have confirmed the expression of these proposed spaceflight-associated miRNAs in rodents reacting to simulated spaceflight conditions. Moreover, astronaut samples from the NASA Twins Study confirmed these expression signatures in miRNA sequencing, single-cell RNA sequencing (scRNA-seq), and single-cell assay for transposase accessible chromatin (scATAC-seq) data. Additionally, a subset of these miRNAs (miR-125, miR-16, and let-7a) was found to regulate vascular damage caused by simulated deep space radiation. To demonstrate the physiological relevance of key spaceflight-associated miRNAs, we utilized antagomirs to inhibit their expression and successfully rescue simulated deep-space-radiation-mediated damage in human 3D vascular constructs.

11 June 2024 in Nature
Verified
Journal Article
Open access
PDF file
Christopher MasonChristopher Mason
Christopher Mason
JGJames Lauer Green
James Lauer Green
KONSTANTINOS ADAMOPOULOSKONSTANTINOS ADAMOPOULOS
KONSTANTINOS ADAMOPOULOS
EAEvan E. Afshin
Evan E. Afshin
JBJordan J. Baechle
Jordan J. Baechle
ABAfshin Beheshti
Afshin Beheshti
The recent acceleration of commercial, private, and multi-national spaceflight has created an unprecedented level of activity in low Earth orbit (LEO), concomitant with the highest-ever number of crewed missions entering space and preparations for exploration-class (>1 year) missions. Such rapid advancement into space from many new companies, countries, and space-related entities has enabled a“Second Space Age.” This new era is also poised to leverage, for the first time, modern tools and methods of molecular biology and precision medicine, thus enabling precision aerospace medicine for the crews. The applications of these biomedical technologies and algorithms are diverse, encompassing multi-omic, single-cell, and spatial biology tools to investigate human and microbial responses to spaceflight. Additionally, they extend to the development of new imaging techniques, real-time cognitive assessments, physiological monitoring, and personalized risk profiles tailored for astronauts. Furthermore, these technologies enable advancements in pharmacogenomics (PGx), as well as the identification of novel spaceflight biomarkers and the development of corresponding countermeasures. In this review, we highlight some of the recent biomedical research from the National Aeronautics and Space Administration (NASA), Japan Aerospace Exploration Agency (JAXA), European Space Agency (ESA), and other space agencies, and also detail the commercial spaceflight sector’s (e.g. SpaceX, Blue Origin, Axiom, Sierra Space) entrance into aerospace medicine and space biology, the first aerospace medicine biobank, and the myriad upcoming missions that will utilize these tools to ensure a permanent human presence beyond LEO, venturing out to other planets and moons.

Verified
Journal Article
Open access
PDF file
ABAfshin Beheshti
Afshin Beheshti
JMJohn McDonald
John McDonald
Megumi HadaMegumi Hada
Megumi Hada
Akihisa TakahashiAkihisa Takahashi
Akihisa Takahashi
Christopher MasonChristopher Mason
Christopher Mason
MMMaddalena Mognato
Maddalena Mognato
The space environment consists of a complex mixture of different types of ionizing radiation and altered gravity that represents a threat to humans during space missions. In particular, individual radiation sensitivity is strictly related to the risk of space radiation carcinogenesis. Therefore, in view of future missions to the Moon and Mars, there is an urgent need to estimate as accurately as possible the individual risk from space exposure to improve the safety of space exploration. In this review, we survey the combined effects from the two main physical components of the space environment, ionizing radiation and microgravity, to alter the genetics and epigenetics of human cells, considering both real and simulated space conditions. Data collected from studies on human cells are discussed for their potential use to estimate individual radiation carcinogenesis risk from space exposure.

20 November 2019 in Scientific Reports
Verified
Journal Article
Open access
PDF file
ABAfshin Beheshti
Afshin Beheshti
KSKristen Stevenson
Kristen Stevenson
CVCharles Vanderburg
Charles Vanderburg
RDRavi Dashnamoorthy
Ravi Dashnamoorthy
JMJohn McDonald
John McDonald
AEAndrew M Evens
Andrew M Evens
There remains a need to identify new sensitive diagnostic and predictive blood-based platforms in lymphoma. We previously discovered a novel circulating microRNA (miRNA) signature in a Smurf2-deficient mouse model that spontaneously develops diffuse large B-cell lymphoma (DLBCL). Herein, we investigated this 10-miRNA signature (miR-15a, let-7c, let-7b, miR-27a, miR-10b, miR-18a, miR-497, miR-130a, miR24, and miR-155) in human lymphoma cell lines, mice engrafted with patient-derived xenografts (PDXs), and DLBCL patient serum samples leveraging systems biology analyses and droplet digital PCR (ddPCR) technology. Overall, 90% of the miRNAs were enriched in PDX DLBCL models and human lymphoma cell lines. Circulating miRNAs from the serum of 86 DLBCL patients were significantly increased compared with healthy controls and had similar patterns to the murine models. Strikingly, miRNAs were identified up to 27-fold higher levels in the serum of PDX-bearing mice and human patients compared with lymphoma cell lysates, suggesting a concentration of these factors over time within sera. Using cut-points from recursive partitioning analysis, we derived a 5-miRNA signature (let-7b, let-7c, miR-18a, miR-24, and miR-15a) with a classification rate of 91% for serum from patients with DLBCL versus normal controls. In addition, higher levels of circulating let-7b miRNA were associated with more advanced stage disease (i.e., III-IV vs. I-II) in DLBCL patients and higher levels of miR-27a and miR-24 were associated with MYC rearrangement. Taken together, circulating multi-miRNAs were readily detectable in pre-clinical cell line and human lymphoma models as well as in DLBCL patients where they appeared to distinguish clinico-pathologic subtypes and disease features.