Hydrocarbons occur in fossil fuels such as crude oil and consist mainly of hydrogen and carbon. Although they are natural chemicals, crude oil refining results in commercial products with new physico-chemical properties, which can increase their complexity and toxicity, and hamper their degradation. The presence of biodiverse natural microbial communities is a prerequisite for an effective homeostatic response to the various hydrocarbons, that contaminate ecosystems. However, their removal depends on the compartment contaminated (water, sediment, soil), their molecular weight, and their toxicity not hampering microbial activity. This paper reports different bacterial species involved in the biodegradation of aliphatic and aromatic hydrocarbons. Hydrocarbon contamination is generally due to the co-presence of a mixture of these chemicals, and their removal from the environment cannot rely on only a single species but generally requires bacterial consortia. Versatile bacterial metabolism relies on specific genes encoding the key enzymes involved in the peripheral metabolic and central metabolic pathways for degrading aliphatic and polycyclic aromatic hydrocarbons. Although microbial metabolism can have the potential for natural attenuation of these contaminants, hydrocarbon bioremediation, through biostimulation (e.g., use of surfactants, plants, earthworms, and nanoparticles) and bioaugmentation, can be a valid tool for removing them from actually contaminated soil, freshwater, groundwater, and seawater.

River contamination is due to a chemical mixture of point and diffuse pollution, which can compromise water quality. Polycyclic Aromatic Hydrocarbons (PAHs) and emerging compounds such as pharmaceuticals and antibiotics are frequently found in rivers flowing through big cities. This work evaluated the presence of fifteen priority PAHs, eight pharmaceuticals including the antibiotics ciprofloxacin (CIP) and sulfamethoxazole (SMX), together with their main antibiotic resistant genes (ARGs) and the structure of the natural bacterioplankton community, in an urbanized stretch of the river Danube. SMX and diclofenac were the most abundant chemicals found (up to 20 ng/L). ARGs were also found to be detected as ubiquitous contaminants. A principal component analysis of the overall microbiological and chemical data revealed which contaminants were correlated with the presence of certain bacterial groups. The highest concentrations of naphthalene were associated with Deltaproteobacteria and intI1 gene. Overall, the most contaminated site was inside the city and located immediately downstream of a wastewater treatment plant. However, both the sampling points before the river reached the city and in its southern suburban area were still affected by emerging and legacy contamination. The diffuse presence of antibiotics and ARGs causes particular concern because the river water is used for drinking purposes.

A wide use of foaming agents as lubricants is required in mechanized tunneling. Their main component, the anionic surfactant sodium lauryl ether sulphate (SLES), can remain in residual concentrations in soil debris, influencing their potential reuse as by-product. This study aimed at evaluating the environmental fate and effects of a foaming product used for conditioning soils collected from real excavation sites, in the presence/absence of an anti-clogging polymer, both containing SLES. Soil microcosm experiments were set-up and incubated for 28 days. Over time, soils and their water extracts (elutriates) were collected to perform both ecotoxicological tests (Vibrio fischeri, Lepidium sativum, Eisenia foetida, Hetereocypris incongruens, Danio rerio) and SLES analysis. The results showed that, just after conditioning, SLES did not exert any hazardous effect on the organisms tested except for the bacterium V. fischeri, which was the most sensitive to its presence. However, from day seven the toxic effect on the bacterium was never observed thanks to the SLES decrease in the elutriates (<2 mg/L). SLES degraded in soils (half-lives from 9 to 25 days) with higher disappearance rates corresponding to higher values of microbial abundances. This study highlights the importance of site-specific studies for assessing the environmental reuse of spoil materials.

The anionic surfactant Sodium Lauryl Ether Sulfate (SLES) is the principal component of several commercial foaming products for soil conditioning in the tunneling industry. Huge amounts of spoil material are produced during the excavation process and the presence of SLES can affect its re-use as a by-product. Anionic surfactants can be a risk for ecosystems if occurring in the environment at toxic concentrations. SLES biodegradability is a key issue if the excavated soil is to be reused. The aim of this study was to identify bacteria able to degrade SLES, so that it could potentially be used in bioaugmentation techniques. Enrichment cultures were performed using bacterial populations from spoil material collected in a tunnel construction site as the inoculum. A bacterial consortium able to grow in a few hours with SLES concentrations from 125 mg/L to 2 g/L was selected and then identified by Next Generation Sequencing analysis. Most of bacteria identified belonged to Gamma-Proteobacteria (99%) and Pseudomonas (ca 90%) was the predominant genus. The bacterial consortium was able to degrade 94% of an initial SLES concentration of 250 mg/L in 9 h. A predictive functional analysis using the PICRUSt2 software showed the presence of esterase enzymes, responsible for SLES degradation. The bacterial consortium selected could be useful for its possible seeding (bioaugmentation) on spoil material from tunneling excavation.

Anaerobic digestion (AD) is a waste-to-energy strategy that leverages natural microbiological processes. It is increasingly used in farms to treat manure, resulting in biogas for energy production and digestate as fertiliser. However, animal manure often contains antibiotic (AB) residues, raising concerns about their impact on AD efficiency and their potential spread through digestate use. This multidisciplinary study evaluated the effects of an AB mixture (enrofloxacin, ciprofloxacin and sulfamethoxazole) on CH₄ production, microbial community (Fungi, Bacteria and Archaea) dynamics and antibiotic resistance gene (ARG) presence. The experiment used a cattle manure/digestate ratio of 1:35, typical of real digesters, with AB concentrations set at low (2.5 mg kg⁻¹ each) and high (7.5 mg kg⁻¹ each) levels. The ABs affected cumulative CH₄ production (ranging from 5939 to 6464 mL) only at the highest concentration. After 51 days, sulfamethoxazole reached residual levels, while enrofloxacin and ciprofloxacin were only partially degraded (<50%), but ARGs were significantly reduced. The microbial community, particularly prokaryotes, exhibited resilience, maintaining efficient CH₄ production. Overall findings strongly suggest that AD is an effective treatment for producing energy and good fertiliser, also reducing AB and ARG content as well as mitigating CH₄ emissions into the atmosphere.

Heavy metal (HM) contamination represents a significant threat to soil functionality and ecosystem health. The present study aims to assess the efficacy of an integrated bioremediation strategy combining Lavandula angustifolia (lavender) and a four-strain bacterial consortium in restoring a multi-contaminated soil collected from a former industrial site in Southern Italy. Microcosm experiments were conducted over a period of 90 days, including three treatments and a control: a planted condition (PLANT), a bioaugmented condition (BIOAUG), and a combined plant and bioaugmentation condition (PLANT+BIOAUG). The control (HCS) consisted of unplanted and non-bioaugmented soil. Soil physico-chemical parameters (e.g., pH, electrical conductivity, and heavy metal concentrations), plant growth, microbial abundance, and dehydrogenase activity (DHA) were measured at the initial and final experimental time. Finally, a Soil Quality Index (SQI) was applied. The combined treatment (PLANT+BIOAUG) promoted a significant reduction in total Pb and Sn concentrations by 44.7% and 66.9%, respectively. Moreover, a significant increase in soil pH and microbial abundance was observed. Applying the SQI to integrate overall soil data made it possible to highlight the highest quality score (0.73) for this condition. These findings suggest the potential effectiveness of lavender-assisted bioaugmentation as a scalable and multifunctional strategy for remediating heavy metal-contaminated soils, in line with ecological restoration principles.