Reza Shaebani

Dr. Reza Shaebani


Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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10 March 2020 in Nature Reviews Physics
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RSReza Shaebani
Reza Shaebani
AWAdam Wysocki
Adam Wysocki
RWRoland Winkler
Roland Winkler
GGGerhard Gompper
Gerhard Gompper
HRHeiko Rieger
Heiko Rieger

7 September 2018 in Science Advances
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JNJavad Najafi
Javad Najafi
RSReza Shaebani
Reza Shaebani
TJThomas John
Thomas John
FAFlorian Altegoer
Florian Altegoer
GBGert Bange
Gert Bange
CWChristian Wagner
Christian Wagner
Peritrichous bacteria synchronize and bundle their flagella to actively swim, while disruption of the bundle leads to a slow motility phase with a weak propulsion. It is still not known whether the number of flagella represents an evolutionary adaptation toward optimizing bacterial navigation. We study the swimming dynamics of differentially flagellated Bacillus subtilis strains in a quasi–two-dimensional system. We find that decreasing the number of flagella Nf reduces the average turning angle between two successive run phases and enhances the run time and the directional persistence of the run phase. As a result, having fewer flagella is beneficial for long-distance transport and fast spreading, while having a lot of flagella is advantageous for the processes that require a slower spreading, such as biofilm formation. We develop a two-state random walk model that incorporates spontaneous switchings between the states and yields exact analytical expressions for transport properties, in remarkable agreement with experiments. The results of numerical simulations based on our two-state model suggest that the efficiency of searching and exploring the environment is optimized at intermediate values of Nf. The optimal choice of Nf, for which the search time is minimized, decreases with increasing the size of the environment in which the bacteria swim.

15 September 2014 in Physical Review E
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RSReza Shaebani
Reza Shaebani
ZSZeinab Sadjadi
Zeinab Sadjadi
ISIgor Sokolov
Igor Sokolov
HRHeiko Rieger
Heiko Rieger
LSLudger Santen
Ludger Santen
We theoretically study the transport properties of self-propelled particles on complex structures, such as motor proteins on filament networks. A general master equation formalism is developed to investigate the persistent motion of individual random walkers, which enables us to identify the contributions of key parameters: the motor processivity, and the anisotropy and heterogeneity of the underlying network. We prove the existence of different dynamical regimes of anomalous motion, and that the crossover times between these regimes as well as the asymptotic diffusion coefficient can be increased by several orders of magnitude within biologically relevant control parameter ranges. In terms of motion in continuous space, the interplay between stepping strategy and persistency of the walker is established as a source of anomalous diffusion at short and intermediate time scales.

16 November 2016 in Scientific Reports
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AHAnne E. Hafner
Anne E. Hafner
LSLudger Santen
Ludger Santen
HRHeiko Rieger
Heiko Rieger
RSReza Shaebani
Reza Shaebani
Cytoskeletal motor proteins are involved in major intracellular transport processes which are vital for maintaining appropriate cellular function. When attached to cytoskeletal filaments, the motor exhibits distinct states of motility: active motion along the filaments, and pause phase in which it remains stationary for a finite time interval. The transition probabilities between motion and pause phases are asymmetric in general, and considerably affected by changes in environmental conditions which influences the efficiency of cargo delivery to specific targets. By considering the motion of individual non-interacting molecular motors on a single filament as well as a dynamic filamentous network, we present an analytical model for the dynamics of self-propelled particles which undergo frequent pause phases. The interplay between motor processivity, structural properties of filamentous network, and transition probabilities between the two states of motility drastically changes the dynamics: multiple transitions between different types of anomalous diffusive dynamics occur and the crossover time to the asymptotic diffusive or ballistic motion varies by several orders of magnitude. We map out the phase diagrams in the space of transition probabilities, and address the role of initial conditions of motion on the resulting dynamics.

25 June 2015 in Physical Review E
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ZSZeinab Sadjadi
Zeinab Sadjadi
RSReza Shaebani
Reza Shaebani
HRHeiko Rieger
Heiko Rieger
LSLudger Santen
Ludger Santen
The motion of self-propelled particles is modeled as a persistent random walk. An analytical framework is developed that allows the derivation of exact expressions for the time evolution of arbitrary moments of the persistent walk's displacement. It is shown that the interplay of step length and turning angle distributions and self-propulsion produces various signs of anomalous diffusion at short time scales and asymptotically a normal diffusion behavior with a broad range of diffusion coefficients. The crossover from the anomalous short-time behavior to the asymptotic diffusion regime is studied and the parameter dependencies of the crossover time are discussed. Higher moments of the displacement distribution are calculated and analytical expressions for the time evolution of the skewness and the kurtosis of the distribution are presented.

28 December 2020 in Physical Review Letters
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RSReza Shaebani
Reza Shaebani
RJRobin Jose
Robin Jose
LSLudger Santen
Ludger Santen
LSLuiza Stankevicins
Luiza Stankevicins
Franziska LautenschlägerFranziska Lautenschläger
Franziska Lautenschläger
Migration of immune cells within the human body allows them to fulfill their main function of detecting pathogens. We present experimental evidence showing the optimality of the search strategy of these cells, which is of crucial importance to achieve an efficient immune response. We find that the speed and directional persistence of migrating dendritic cells in our in vitro experiments are highly correlated, which enables them to reduce their search time. We introduce theoretically a new class of random search optimization problems by minimizing the mean first-passage time (MFPT) with respect to the strength of the coupling between influential parameters. We derive an analytical expression for the MFPT in a confined geometry and verify that the correlated motion enhances the search efficiency if the mean persistence length is sufficiently shorter than the confinement size. Our correlated search optimization approach provides an efficient searching recipe and predictive power in a broad range of correlated stochastic processes.