Kutlu O. Ulgen

Prof. Dr. Kutlu O. Ulgen

Chemical Engineering, Boğaziçi University, Istanbul, İstanbul, Turkey (Türkiye)
orcid

Research Focus & Metrics

Academic Career Length

34Years (1993-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 June 2005 in Process Biochemistry
Verified
Journal Article
Closed access
NKNigar Kantarci
Nigar Kantarci
FBFahir Borak
Fahir Borak
KUKutlu O. Ulgen
Kutlu O. Ulgen

20 March 2013 in Bioinformatics
Verified
Journal Article
Open access
PDF file
STSaliha Durmuş Tekir
Saliha Durmuş Tekir
TÇTunahan Çakır
Tunahan Çakır
EAEmre Ardıç
Emre Ardıç
ASAli Semih Sayılırbaş
Ali Semih Sayılırbaş
GKGökhan Konuk
Gökhan Konuk
KUKutlu O. Ulgen
Kutlu O. Ulgen
Summary: Knowledge of pathogen–host protein interactions is required to better understand infection mechanisms. The pathogen–host interaction search tool (PHISTO) is a web-accessible platform that provides relevant information about pathogen–host interactions (PHIs). It enables access to the most up-to-date PHI data for all pathogen types for which experimentally verified protein interactions with human are available. The platform also offers integrated tools for visualization of PHI networks, graph–theoretical analysis of targeted human proteins, BLAST search and text mining for detecting missing experimental methods. PHISTO will facilitate PHI studies that provide potential therapeutic targets for infectious diseases. Availability:http://www.phisto.org. Contact:saliha.durmus@boun.edu.tr Supplementary information: Supplementary data are available at Bioinformatics online.

1 May 2000 in Process Biochemistry
Verified
Journal Article
Closed access
BÖBelma Özbek
Belma Özbek
KUKutlu O. Ulgen
Kutlu O. Ulgen

26 September 2006 in Molecular Systems Biology
Verified
Journal Article
Open access
PDF file
TÇTunahan Çakır
Tunahan Çakır
KPKiran Raosaheb Patil
Kiran Raosaheb Patil
ZÖZeynep Ilsen Önsan
Zeynep Ilsen Önsan
KUKutlu O. Ulgen
Kutlu O. Ulgen
BKBetül Kirdar
Betül Kirdar
JNJens Nielsen
Jens Nielsen
EMBO Press is an editorially independent publishing platform for the development of EMBO scientific publications.

1 September 2017 in Biomicrofluidics
Verified
Journal Article
Closed access
EGElif Gencturk
Elif Gencturk
SMSenol Mutlu
Senol Mutlu
KUKutlu O. Ulgen
Kutlu O. Ulgen
Silicon and glass were the main fabrication materials of microfluidic devices, however, plastics are on the rise in the past few years. Thermoplastic materials have recently been used to fabricate microfluidic platforms to perform experiments on cellular studies or environmental monitoring, with low cost disposable devices. This review describes the present state of the development and applications of microfluidic systems used in cell biology and analyses since the year 2000. Cultivation, separation/isolation, detection and analysis, and reaction studies are extensively discussed, considering only microorganisms (bacteria, yeast, fungi, zebra fish, etc.) and mammalian cell related studies in the microfluidic platforms. The advantages/disadvantages, fabrication methods, dimensions, and the purpose of creating the desired system are explained in detail. An important conclusion of this review is that these microfluidic platforms are still open for research and development, and solutions need to be found for each case separately.

1 July 2017 in Biomicrofluidics
Verified
Journal Article
Closed access
PDF file
SAS. Altundemir
S. Altundemir
AUA. K. Uguz
A. K. Uguz
KUKutlu O. Ulgen
Kutlu O. Ulgen
Paper-based microfluidics has attracted attention for the last ten years due to its advantages such as low sample volume requirement, ease of use, portability, high sensitivity, and no necessity to well-equipped laboratory equipment and well-trained manpower. These characteristics have made paper platforms a promising alternative for a variety of applications such as clinical diagnosis and quantitative analysis of chemical and biological substances. Among the wide range of fabrication methods for microfluidic paper-based analytical devices (μPADs), the wax printing method is suitable for high throughput production and requires only a commercial printer and a heating source to fabricate complex two or three-dimensional structures for multipurpose systems. μPADs can be used by anyone for in situ diagnosis and analysis; therefore, wax printed μPADs are promising especially in resource limited environments where people cannot get sensitive and fast diagnosis of their serious health problems and where food, water, and related products are not able to be screened for toxic elements. This review paper is focused on the applications of paper-based microfluidic devices fabricated by the wax printing technique and used for international health. Besides presenting the current limitations and advantages, the future directions of this technology including the commercial aspects are discussed. As a conclusion, the wax printing technology continues to overcome the current limitations and to be one of the promising fabrication techniques. In the near future, with the increase of the current interest of the industrial companies on the paper-based technology, the wax-printed paper-based platforms are expected to take place especially in the healthcare industry.