Imon Banerjee

Dr. Imon Banerjee


Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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16 October 2020 in npj Digital Medicine
Verified
Journal Article
Open access
PDF file
SHShih-Cheng Huang
Shih-Cheng Huang
APAnuj Pareek
Anuj Pareek
SSSaeed Seyyedi
Saeed Seyyedi
IBImon Banerjee
Imon Banerjee
MLMatthew P. Lungren
Matthew P. Lungren
Advancements in deep learning techniques carry the potential to make significant contributions to healthcare, particularly in fields that utilize medical imaging for diagnosis, prognosis, and treatment decisions. The current state-of-the-art deep learning models for radiology applications consider only pixel-value information without data informing clinical context. Yet in practice, pertinent and accurate non-imaging data based on the clinical history and laboratory data enable physicians to interpret imaging findings in the appropriate clinical context, leading to a higher diagnostic accuracy, informative clinical decision making, and improved patient outcomes. To achieve a similar goal using deep learning, medical imaging pixel-based models must also achieve the capability to process contextual data from electronic health records (EHR) in addition to pixel data. In this paper, we describe different data fusion techniques that can be applied to combine medical imaging with EHR, and systematically review medical data fusion literature published between 2012 and 2020. We conducted a systematic search on PubMed and Scopus for original research articles leveraging deep learning for fusion of multimodality data. In total, we screened 985 studies and extracted data from 17 papers. By means of this systematic review, we present current knowledge, summarize important results and provide implementation guidelines to serve as a reference for researchers interested in the application of multimodal fusion in medical imaging.

25 September 2023 in British Journal of Radiology
Verified
Journal Article
Open access
JGJudy Wawira Gichoya
Judy Wawira Gichoya
KTKaesha Thomas
Kaesha Thomas
LCLeo Anthony Celi
Leo Anthony Celi
NSNabile Safdar
Nabile Safdar
IBImon Banerjee
Imon Banerjee
SPSaptarshi Purkayastha
Saptarshi Purkayastha
Various forms of artificial intelligence (AI) applications are being deployed and used in many healthcare systems. As the use of these applications increases, we are learning the failures of these models and how they can perpetuate bias. With these new lessons, we need to prioritize bias evaluation and mitigation for radiology applications; all the while not ignoring the impact of changes in the larger enterprise AI deployment which may have downstream impact on performance of AI models. In this paper, we provide an updated review of known pitfalls causing AI bias and discuss strategies for mitigating these biases within the context of AI deployment in the larger healthcare enterprise. We describe these pitfalls by framing them in the larger AI lifecycle from problem definition, data set selection and curation, model training and deployment emphasizing that bias exists across a spectrum and is a sequela of a combination of both human and machine factors.

1 June 2019 in Artificial Intelligence in Medicine
Verified
Journal Article
Closed access
IBImon Banerjee
Imon Banerjee
YLYuan Ling
Yuan Ling
MCMatthew C. Chen
Matthew C. Chen
SHSadid A. Hasan
Sadid A. Hasan
CLCurtis P. Langlotz
Curtis P. Langlotz
MLMatthew P. Lungren
Matthew P. Lungren

12 November 2021 in Journal of Clinical Oncology
Verified
Journal Article
Closed access
AYAdam Yala
Adam Yala
PMPeter G. Mikhael
Peter G. Mikhael
FSFredrik Strand
Fredrik Strand
Gigin LinGigin Lin
Gigin Lin
SSSiddharth Satuluru
Siddharth Satuluru
RBRegina Barzilay
Regina Barzilay
PURPOSE: Accurate risk assessment is essential for the success of population screening programs in breast cancer. Models with high sensitivity and specificity would enable programs to target more elaborate screening efforts to high-risk populations, while minimizing overtreatment for the rest. Artificial intelligence (AI)-based risk models have demonstrated a significant advance over risk models used today in clinical practice. However, the responsible deployment of novel AI requires careful validation across diverse populations. To this end, we validate our AI-based model, Mirai, across globally diverse screening populations. METHODS: We collected screening mammograms and pathology-confirmed breast cancer outcomes from Massachusetts General Hospital, USA; Novant, USA; Emory, USA; Maccabi-Assuta, Israel; Karolinska, Sweden; Chang Gung Memorial Hospital, Taiwan; and Barretos, Brazil. We evaluated Uno's concordance index for Mirai in predicting risk of breast cancer at one to five years from the mammogram. RESULTS: A total of 128,793 mammograms from 62,185 patients were collected across the seven sites, of which 3,815 were followed by a cancer diagnosis within 5 years. Mirai obtained concordance indices of 0.75 (95% CI, 0.72 to 0.78), 0.75 (95% CI, 0.70 to 0.80), 0.77 (95% CI, 0.75 to 0.79), 0.77 (95% CI, 0.73 to 0.81), 0.81 (95% CI, 0.79 to 0.82), 0.79 (95% CI, 0.76 to 0.83), and 0.84 (95% CI, 0.81 to 0.88) at Massachusetts General Hospital, Novant, Emory, Maccabi-Assuta, Karolinska, Chang Gung Memorial Hospital, and Barretos, respectively. CONCLUSION: Mirai, a mammography-based risk model, maintained its accuracy across globally diverse test sets from seven hospitals across five countries. This is the broadest validation to date of an AI-based breast cancer model and suggests that the technology can offer broad and equitable improvements in care.

23 July 2023
Verified
Book Chapter
Open access
PDF file
SDSusmita Das
Susmita Das
ATAmara Tariq
Amara Tariq
TSThiago Santos
Thiago Santos
SKSai Sandeep Kantareddy
Sai Sandeep Kantareddy
IBImon Banerjee
Imon Banerjee
Recurrent neural networks (RNNs) are neural network architectures with hidden state and which use feedback loops to process a sequence of data that ultimately informs the final output. Therefore, RNN models can recognize sequential characteristics in the data and help to predict the next likely data point in the data sequence. Leveraging the power of sequential data processing, RNN use cases tend to be connected to either language models or time-series data analysis. However, multiple popular RNN architectures have been introduced in the field, starting from SimpleRNN and LSTM to deep RNN, and applied in different experimental settings. In this chapter, we will present six distinct RNN architectures and will highlight the pros and cons of each model. Afterward, we will discuss real-life tips and tricks for training the RNN models. Finally, we will present four popular language modeling applications of the RNN models –text classification, summarization, machine translation, and image-to-text translation– thereby demonstrating influential research in the field.

24 April 2020 in npj Digital Medicine
Verified
Journal Article
Open access
PDF file
SHShih-Cheng Huang
Shih-Cheng Huang
TKTanay Kothari
Tanay Kothari
IBImon Banerjee
Imon Banerjee
CCChris Chute
Chris Chute
RBRobyn L. Ball
Robyn L. Ball
MLMatthew P. Lungren
Matthew P. Lungren
Pulmonary embolism (PE) is a life-threatening clinical problem and computed tomography pulmonary angiography (CTPA) is the gold standard for diagnosis. Prompt diagnosis and immediate treatment are critical to avoid high morbidity and mortality rates, yet PE remains among the diagnoses most frequently missed or delayed. In this study, we developed a deep learning model—PENet, to automatically detect PE on volumetric CTPA scans as an end-to-end solution for this purpose. The PENet is a 77-layer 3D convolutional neural network (CNN) pretrained on the Kinetics-600 dataset and fine-tuned on a retrospective CTPA dataset collected from a single academic institution. The PENet model performance was evaluated in detecting PE on data from two different institutions: one as a hold-out dataset from the same institution as the training data and a second collected from an external institution to evaluate model generalizability to an unrelated population dataset. PENet achieved an AUROC of 0.84 [0.82–0.87] on detecting PE on the hold out internal test set and 0.85 [0.81–0.88] on external dataset. PENet also outperformed current state-of-the-art 3D CNN models. The results represent successful application of an end-to-end 3D CNN model for the complex task of PE diagnosis without requiring computationally intensive and time consuming preprocessing and demonstrates sustained performance on data from an external institution. Our model could be applied as a triage tool to automatically identify clinically important PEs allowing for prioritization for diagnostic radiology interpretation and improved care pathways via more efficient diagnosis.