Humic acid, as a novel organic fertilizer, has the potential to improve soil fertility and the agronomic performance of crops. However, the efficacy of humic acid varied in previous studies and the mechanisms by which climatic conditions, soil properties, and fertilization regimes regulate it remain unclear. To test this, a comprehensive meta-analysis was conducted to evaluate the effects of humic acid across various environmental and agricultural conditions. The results showed that the humic acid amendment significantly increased the crop yield by 12%, nitrogen use efficiency by 27%, and nitrogen uptake by 17%, on average. Optimal effects were observed in regions with an annual precipitation > 300 mm and mean annual temperatures > 10 °C, and in soils with a moderate pH (6 < pH ≤ 8) or low total nitrogen. Its efficacy was attenuated in alkaline soils and high total nitrogen (≤1.5 g kg⁻¹) or low soil organic carbon (<10 g kg⁻¹) conditions. Cash crops and upland cereals showed a superior response compared to paddy rice, with optimal nitrogen application rates of 100–200 kg ha⁻¹. This study quantifies humic acid’s positive impacts on crop productivity and nitrogen utilization across various conditions, providing empirical evidence for optimizing its application in sustainable agricultural systems, potentially reducing excessive fertilizer use and its associated environmental pollution.

Nitrous oxide (N₂O) and nitric oxide (NO) are detrimental reactive gaseous oxides of nitrogen. Excessive application of nitrogen fertilizers in cropping systems has significantly increased the emissions of these gases, causing adverse environmental consequences. Previous studies have demonstrated that biochar amendment can regulate soil-N dynamics and mitigate N losses, but they lacked simultaneous assessments of soil N₂O and NO emissions. Thus, the factors influencing the emissions of nitrogen oxides are still unclear. Therefore, this study examined the impact of biochar application on simultaneous N₂O and NO emissions based on 18 peer-reviewed papers (119 paired observations). A machine learning model (boosted regression tree model) was adopted to assess the potential influencing factors, such as soil properties, biochar characteristics, and field management conditions. The addition of biochar reduced N₂O and NO emissions by 16.2% and 14.7%, respectively. Biochar with a high total carbon content and pH, from woody or herbaceous feedstock, pyrolyzed at a high temperature, applied at a moderate rate and to soil with a high-silt content, a moderate pH, and coarse texture, could simultaneously reduce soil N₂O and NO emissions. Biochar amendment, thus, has the potential to lower the environmental impact of crop production. Furthermore, the influence of soil properties, biochar characteristics, and field management should be considered in the future to enhance the efficacy of biochar.

Rice (Oryza) is a genus in the Gramineae family, which has grown widely all over the world and is a staple food source for people’s survival. The genetic information of rice has garnered significant attention in recent years, prompting numerous researchers to conduct extensive investigations in this field. But rice mitochondrial codon usage patterns have received little attention. The present study systematically analyzed the codon usage patterns and sources of variance in the mitochondrial genome sequences of five rice species by the CodonW and R software programs. Our results revealed that the GC content of codons in rice mitochondrial genome genes was determined to be 43.60%. Notably, the individual codon positions exhibited distinct GC contents: 48.00% for position 1, 42.65% for position 2, and 40.16% for position 3. These findings suggest the preference of the rice mitochondrial genome for codons ending in A or U. A weak codon bias was observed, with the effective number of codons (ENC) varying between 40.02 and 61.00, with an average value of 54.34. Subsequently, we identified 25 identical high-frequency codons in five rice mitochondrial genomes, with 11 codons ending in A and 12 codons ending in U. The regression lines in the neutrality plot exhibited slopes of less than 0.5 in five rice species, indicating a predominant role of natural selection, while mutation pressure remained relatively insignificant. In the PR2-plot analysis, most of the genes were located in the right half of the plot, indicating that the third base of the synonymous codon was preferred to end in G than C. Additionally, the ENC plot and ENC ratio analysis unveiled that codon preferences in the rice mitochondrial genome were predominantly influenced by natural selection rather than mutational pressure. The analysis of correspondence revealed distinct variations in the codon usage pattern across five rice mitochondrial genomes. Based on the RSCU values of species, a cluster tree was inconsistent with the mitochondrial genetic data, indicating that RSCU data could not be used as a basis for classification at the species level in the Oryza genus. These results will help decide the specific types of natural selection pressures influencing codon usage and improve the expression of exogenous genes in rice mitochondrial genomes by optimizing their codons.

Acid rain deposition (AR) has long-lasting implications for the community stability and biodiversity conservation in southwest China. Acer catalpifolium is a critically endangered species in the rain zone of Western China where AR occurs frequently. To understand the effects of AR on the morphology and physiology of A. catalpifolium, we conducted an acid stress simulation experiment for 1.5 years. The morphological, physiological, and photosynthetic responses of A. catalpifolium to the acidity, composition, and deposition pattern of acid stress was observed. The results showed that simulated acid stress can promote the growth of A. catalpifolium via the soil application mode. The growth improvement of A. catalpifolium under nitric-balanced acid rain via the soil application mode was greater than that of sulfuric-dominated acid rain via the soil application mode. On the contrary, the growth of A. catalpifolium was significantly inhibited by acid stress and the inhibition increased with the acidity of acid stress applied via leaf spraying. The inhibitory impacts of nitric-balanced acid rain via the leaf spraying of A. catalpifolium were greater than that of sulfur-dominant acid rain via leaf spraying. The observations presented in this work can be utilized for considering potential population restoration plans for A. catalpifolium, as well as the forests in southwest China.

Plants dynamically regulate ions in the tree to defend against abiotic stresses such as drought and saline-alkali, However, it is not clear how ‘Junzao’ jujube regulates ions to maintain a normal life cycle under saline-alkali stress. Therefore, in this study, the roots of 10-year old steer jujube trees were watered using a saline and alkaline gradient solution simulating the main salt (NaCl) and alkali (NaHCO₃) of Aral with NaCl:NaHCO₃ = 3:1 gradient of 0, 60, 180, and 300 mM, and three jujube trees with uniform growth were taken as samples in each treatment plot, and the ion contents of potassium (K), sodium (Na), calcium (Ca), magnesium (Mg), iron (Fe), manganese (Mn), zinc (Zn) and carbon (C) in each organ of the fruit at the dot red period (S1) and full-red period (S2) were determined, in order to elucidate the relationship between physiological adaptation mechanisms of saline-alkali tolerance and the characteristics of mineral nutrient uptake and utilisation in jujube fruit. The results showed that under saline-alkali stress, Na was stored in large quantities in the roots, Ca and Mg in the perennial branches at S1, Na and Fe in the leaves at S2, and K, Mg and Mn in the perennial branches. There was no significant difference in the distribution of C content in various organs of ‘Junzao’. Compared with CK (0 mM), under salinity stress, the K content in the leaves was significantly reduced at S1 and S2, and the K/Na ratios remained > 1.0. At S2, under medium and high concentrations of saline-alkali stress (180–300 mM), the K/Na is less than 1, and the ionic homeostasis was disrupted, and the leaves die and fall off, and the Na is excreted from the body. The selective transport coefficients SK/Na, SCa/Na and SMg/Na from root to leaf showed a downward trend at S1, but still maintained positive transport capacity. At S2, this stage is close to leaf fall, the nutrient transport coefficient is less than 1, and a large amount of nutrients are returned to the perennial branches and roots occurred. These results indicated that the mechanism of nutrient regulation and salt tolerance in jujube trees was different at different growth stages.