Oral cancer is a prevalent malignancy that affects the oral cavity in the region of head and neck. The study of oral malignant lesions is an essential step for the clinicians to provide a better treatment plan at an early stage for oral cancer. Deep learning based computer-aided diagnostic system has achieved success in many applications and can provide an accurate and timely diagnosis of oral malignant lesions. In biomedical image classification, getting large training dataset is a challenge, which can be efficiently handled by transfer learning as it retrieves the general features from a dataset of natural images and adapted directly to new image dataset. In this work, to achieve an effective deep learning based computer-aided system, the classifications of Oral Squamous Cell Carcinoma (OSCC) histopathology images are performed using two proposed approaches. In the first approach, to identify the best appropriate model to differentiate between benign and malignant cancers, transfer learning assisted deep convolutional neural networks (DCNNs), are considered. To handle the challenge of small dataset and further increase the training efficiency of the proposed model, the pretrained VGG16, VGG19, ResNet50, InceptionV3, and MobileNet, are fine-tuned by training half of the layers and leaving others frozen. In the second approach, a baseline DCNN architecture, trained from scratch with 10 convolution layers is proposed. In addition, a comparative analysis of these models is carried out in terms of classification accuracy and other performance measures. The experimental results demonstrate that ResNet50 obtains substantially superior performance than selected fine-tuned DCNN models as well as the proposed baseline model with an accuracy of 96.6%, precision and recall values are 97% and 96%, respectively.
10 February 2021 in Interdisciplinary Sciences: Computational Life Sciences
Background: The incidence of Oral Cancer (OC) is high in Asian countries, which goes undetected at its early stage. The study of genetics, especially genetic networks holds great promise in this endeavor. Hub genes in a genetic network are prominent in regulating the whole network structure of genes. Thus identification of such genes related to specific cancer types can help in reducing the gap in OC prognosis.
Colonoscopy is a gold standard procedure for tracking the lower gastrointestinal region. A colorectal polyp is one such condition that is detected through colonoscopy. Even though technical advancements have improved the early detection of colorectal polyps, there is still a high percentage of misses due to various factors. Polyp segmentation can play a significant role in the detection of polyps at the early stage and can thus help reduce the severity of the disease. In this work, the authors implemented several image pre-processing techniques such as coherence transport and contrast limited adaptive histogram equalization (CLAHE) to handle different challenges in colonoscopy images. The processed image was then segmented into a polyp and normal pixel using a U-Net-based deep learning segmentation model named UPolySeg. The main framework of UPolySeg has an encoder–decoder section with feature concatenation in the same layer as the encoder–decoder along with the use of dilated convolution. The model was experimentally verified using the publicly available Kvasir-SEG dataset, which gives a global accuracy of 96.77%, a dice coefficient of 96.86%, an IoU of 87.91%, a recall of 95.57%, and a precision of 92.29%. The new framework for the polyp segmentation implementing UPolySeg improved the performance by 1.93% compared with prior work.
2 January 2020 in Journal of Discrete Mathematical Sciences and Cryptography
Breast cancer is one of the vital causes of an increase in the rate of mortality of women in developing countries. Detection of masses in the breast tissue by the radiologists is a significant step in the process of identification of cancer in the breast. Pre-processing in mammogram has played a major role in identifying such masses in the breast. Mammography has emerged as the popular screening approach for early identification of masses in the breast. In this manuscript, we have introduced an improved Dynamic Window based Adaptive Median Filter (DWAMF) for removal of impulse noise. DWAMF algorithm is implemented for removal of noise based on its size in the direction to enhance the image standard. The experimental results of DWAMF has been compared with Standard Median Filter (MF), and its observed that the DWAMF gives better result and higher value along with the introduction of threshold value with the increased percentage of noise. To compare the performance of the studies on filter methods, the Mean square Error (ME), Peak signal to Noise Ratio (PNR) and Structural Content (SC) measures are used to evaluate and compare the performance of the studied models.