João Vasco Ferreira

Dr. João Vasco Ferreira

NOVA Medical School - Faculdade de Ciências Médicas, Universidade Nova de Lisboa, Lisboa, Portugal

Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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29 September 2013 in Autophagy
Verified
Journal Article
Open access
PDF file
JFJoão Vasco Ferreira
João Vasco Ferreira
HFHugo Fôfo
Hugo Fôfo
EBEloy Bejarano
Eloy Bejarano
CBCarla Figueira Bento
Carla Figueira Bento
JRJosé S Ramalho
José S Ramalho
PPPaulo Pereira
Paulo Pereira
The transcription factor HIF1 is mostly regulated by the oxygen-dependent proteasomal degradation of the labile subunit HIF1A. Recent data showed degradation of HIF1A in the lysosome through chaperone-mediated autophagy (CMA). However the molecular mechanism involved has not been elucidated. This study shows that the KFERQ-like motif, that has been identified in all CMA substrates, is required to mediate the interaction between HIF1A and the chaperone HSPA8. Moreover, mutations in the KFERQ-like motif of HIF1A preclude the interaction with the CMA receptor LAMP2A, thus inhibiting its lysosomal degradation. Importantly, we show for the first time that the ubiquitin ligase STUB1 is required for degradation of HIF1A in the lysosome by CMA. Indeed, mutations in STUB1 that inhibit either the ubiquitin ligase activity or its ability to bind to HSPA8, both prevent degradation of HIF1A by CMA. Moreover, we show that HIF1A binds to and is translocated into intact lysosomes isolated from rat livers. This new pathway for degradation of HIF1A does not depend on the presence of oxygen and is activated in response to nutrient deprivation such that the levels of HIF1A bound to CMA positive lysosomes significantly increase in starved animal livers and the binding of HIF1A to LAMP2A increases in response to serum deprivation. Moreover, excessive degradation of HIF1A by CMA compromises cells' ability to respond to and survive under hypoxia, suggesting that this pathway might be of pathophysiological importance in conditions that combine hypoxia with starvation.

25 March 2022 in Science Advances
Verified
Journal Article
Open access
JFJoão Vasco Ferreira
João Vasco Ferreira
ASAna da Rosa Soares
Ana da Rosa Soares
JRJosé S Ramalho
José S Ramalho
CCCatarina Máximo Carvalho
Catarina Máximo Carvalho
MCMª Helena Cardoso
Mª Helena Cardoso
PPPaulo Pereira
Paulo Pereira
Exosomes are extracellular vesicles of endosomal origin that are released by practically all cell types across metazoans. Exosomes are active vehicles of intercellular communication and can transfer lipids, RNAs, and proteins between different cells, tissues, or organs. Here, we describe a mechanism whereby proteins containing a KFERQ motif pentapeptide are loaded into a subpopulation of exosomes in a process that is dependent on the membrane protein LAMP2A. Moreover, we demonstrate that this mechanism is independent of the ESCRT machinery but dependent on HSC70, CD63, Alix, Syntenin-1, Rab31, and ceramides. We show that the master regulator of hypoxia HIF1A is loaded into exosomes by this mechanism to transport hypoxia signaling to normoxic cells. In addition, by tagging fluorescent proteins with KFERQ-like sequences, we were able to follow the interorgan transfer of exosomes. Our findings open new avenues for exosome engineering by allowing the loading of bioactive proteins by tagging them with KFERQ-like motifs.

19 August 2015 in Scientific Reports
Verified
Journal Article
Open access
ASAna Rosa Soares
Ana Rosa Soares
TMTania Martins-Marques
Tania Martins-Marques
TRTeresa M Ribeiro-Rodrigues
Teresa M Ribeiro-Rodrigues
JFJoão Vasco Ferreira
João Vasco Ferreira
SCSteve Catarino
Steve Catarino
HGHenrique Girao
Henrique Girao
Intercellular communication is vital to ensure tissue and organism homeostasis and can occur directly, between neighbour cells via gap junctions (GJ), or indirectly, at longer distances, through extracellular vesicles, including exosomes. Exosomes, as intercellular carriers of messenger molecules, mediate the transfer of biological information between donor and acceptor cells. Although the biological effects of exosomes in target cells have been intensively studied, the mechanisms that govern exosomal uptake are not fully understood. Here, we show that Connexin 43 (Cx43), the most widely expressed GJ protein, is present in exosomes in the form of hexameric channels and, more importantly, that exosomal Cx43 is able to modulate the interaction and transfer of information between exosomes and acceptor cells. This study envisions a new paradigm where Cx43-containing channels mediate the release of exosomal content into cells, which constitutes a novel and unanticipated mechanism to modulate intercellular communication.

11 May 2015 in Scientific Reports
Verified
Journal Article
Open access
PDF file
JFJoão Vasco Ferreira
João Vasco Ferreira
ASAna Rosa Soares
Ana Rosa Soares
JRJosé S Ramalho
José S Ramalho
PPPaulo Pereira
Paulo Pereira
HGHenrique Girao
Henrique Girao
Chaperone-Mediated Autophagy is a selective form of autophagy. Recently, the degradation of a newly identified CMA substrate, the HIF1A transcription factor, was found to be regulated by the ubiquitin ligase STUB1. In this study we show, for the first time, that K63 ubiquitination is necessary for CMA degradation of HIF1A in vitro and in vivo. Additionally, STUB1 mediates K63 linked ubiquitination of HIF1A. Our findings add a new regulatory step and increase the specificity of the molecular mechanism involved in CMA degradation of HIF1A, expanding the role of ubiquitination to yet another biological process, since the same mechanism might be applicable to other CMA substrates.

8 July 2025 in Advanced Healthcare Materials
Verified
Journal Article
Open access
LFLuís Carvalho Ferraz
Luís Carvalho Ferraz
PPPaulo Pereira
Paulo Pereira
JFJoão Vasco Ferreira
João Vasco Ferreira
Extracellular Vesicles (EVs) are nanosized lipid‐bound particles that are pivotal for intercellular communication and actively participate in diverse physiological processes, including immune modulation, proteostasis, and tissue repair. EVs have emerged as promising therapeutic targets and biomarkers because of their significant roles in the pathogenesis of diseases, including cancer, neurodegeneration, and cardiovascular disorders. Despite extensive research on EVs as diagnostic tools and mediators of cellular signaling, the fundamental mechanisms underlying their biogenesis remain unclear. Consequently, this understanding of how the composition of EVs dynamically changes in response to physiological and pathological conditions is often limited, leading to lower diagnostic utility and slower advancements in clinical interventions and EVs engineering. This review explores the intricate mechanisms underlying EVs biogenesis and payload selection, emphasizing how these processes vary across EVs subclasses, thereby underpinning their functional versatility. The biogenetic pathways are highlighted from the ectocytosis‐driven generation of microvesicles and apoptotic body (ApoBDs) formation via membrane blebbing to the formation of exosomes within the endosomal compartments and their regulated release via exocytosis.

28 July 2014 in The FASEB Journal
Verified
Journal Article
Open access
PDF file
TRTeresa M Ribeiro-Rodrigues
Teresa M Ribeiro-Rodrigues
SCSteve Catarino
Steve Catarino
CMCarla Marques
Carla Marques
JFJoão Vasco Ferreira
João Vasco Ferreira
TMTania Martins-Marques
Tania Martins-Marques
HGHenrique Girao
Henrique Girao
Gap junctions (GJs) are specialized cell‐cell contacts formed by connexins (Cxs), which provide direct intercellular communication between eukaryotic cells. Although Cx43 has long been known to be a substrate for ubiquitination, the reversal of this modification by deubiquitylases (DUBs) has never been described. Here we report that the DUB‐associated molecule with the SH3 domain of STAM (AMSH) interacts with Cx43 and mediates its deubiquitination. In this study, we demonstrate that Cx43 is modified with lysine 63‐linked polyubiquitin chains and that these increase the interaction between Cx43 and AMSH. We also show that AMSH is recruited to GJ plaque sites at the plasma membrane, where it mediates the deubiquitination of Cx43. Using siRNA depletion or overexpression of a catalytically inactive mutant of AMSH, we show that by decreasing Cx43 deubiquitination, both the internalization and degradation rate of Cx43 are increased. Overall, these data strongly suggest that AMSH‐mediated deubiquitination of Cx43 protects GJs from degradation.—Ribeiro‐Rodrigues, T. M., Catarino, S., Marques, C., Ferreira, J. V., Martins‐Marques, T., Pereira, P., Girão, H., AMSH‐mediated deubiquitination of Cx43 regulates internalization and degradation of gap junctions. FASEB J. 28, 4629–4641 (2014). www.fasebj.org