Ali Braytee

Dr. Ali Braytee


Research Focus & Metrics

Academic Career Length

12Years (2015-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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9 December 2019 in Cancer Cell
Verified
Journal Article
Closed access
AKAndrei V. Krivtsov
Andrei V. Krivtsov
KEKathryn Evans
Kathryn Evans
JGJayant Y. Gadrey
Jayant Y. Gadrey
BEBenjamin K. Eschle
Benjamin K. Eschle
CHCharlie Hatton
Charlie Hatton
SAScott A. Armstrong
Scott A. Armstrong

13 April 2024 in Information
Verified
Journal Article
Open access
PDF file
YHYingcong Huang
Yingcong Huang
KCKunal Chaturvedi
Kunal Chaturvedi
ANAL-AKHIR NAYAN
AL-AKHIR NAYAN
MHMohammadhesam Hesamian
Mohammadhesam Hesamian
Ali BrayteeAli Braytee
Ali Braytee
Mukesh PrasadMukesh Prasad
Mukesh Prasad
Parkinson’s disease (PD) is a chronic brain disorder affecting millions worldwide. It occurs when brain cells that produce dopamine, a chemical controlling movement, die or become damaged. This leads to PD, which causes problems with movement, balance, and posture. Early detection is crucial to slow its progression and improve the quality of life for PD patients. This paper proposes a handwriting-based prediction approach combining a cosine annealing scheduler with deep transfer learning. It utilizes the NIATS dataset, which contains handwriting samples from individuals with and without PD, to evaluate six different models: VGG16, VGG19, ResNet18, ResNet50, ResNet101, and Vit. This paper compares the performance of these models based on three metrics: accuracy, precision, and F1 score. The results showed that the VGG19 model, combined with the proposed method, achieved the highest average accuracy of 96.67%.

15 June 2016 in PLOS ONE
Verified
Journal Article
Open access
PDF file
AAAli Anaissi
Ali Anaissi
MGMadhu Goyal
Madhu Goyal
DCDaniel R Catchpoole
Daniel R Catchpoole
Ali BrayteeAli Braytee
Ali Braytee
PKPaul J Kennedy
Paul J Kennedy
The identification of a subset of genes having the ability to capture the necessary information to distinguish classes of patients is crucial in bioinformatics applications. Ensemble and bagging methods have been shown to work effectively in the process of gene selection and classification. Testament to that is random forest which combines random decision trees with bagging to improve overall feature selection and classification accuracy. Surprisingly, the adoption of these methods in support vector machines has only recently received attention but mostly on classification not gene selection. This paper introduces an ensemble SVM-Recursive Feature Elimination (ESVM-RFE) for gene selection that follows the concepts of ensemble and bagging used in random forest but adopts the backward elimination strategy which is the rationale of RFE algorithm. The rationale behind this is, building ensemble SVM models using randomly drawn bootstrap samples from the training set, will produce different feature rankings which will be subsequently aggregated as one feature ranking. As a result, the decision for elimination of features is based upon the ranking of multiple SVM models instead of choosing one particular model. Moreover, this approach will address the problem of imbalanced datasets by constructing a nearly balanced bootstrap sample. Our experiments show that ESVM-RFE for gene selection substantially increased the classification performance on five microarray datasets compared to state-of-the-art methods. Experiments on the childhood leukaemia dataset show that an average 9% better accuracy is achieved by ESVM-RFE over SVM-RFE, and 5% over random forest based approach. The selected genes by the ESVM-RFE algorithm were further explored with Singular Value Decomposition (SVD) which reveals significant clusters with the selected data.

17 May 2024 in Scientific Reports
Verified
Journal Article
Open access
PDF file
Ali BrayteeAli Braytee
Ali Braytee
SHSam He
Sam He
STShuxian Tang
Shuxian Tang
YSYuxuan Sun
Yuxuan Sun
XJXiaoying Jiang
Xiaoying Jiang
AAAli Anaissi
Ali Anaissi
Identifying cancer risk groups by multi-omics has attracted researchers in their quest to find biomarkers from diverse risk-related omics. Stratifying the patients into cancer risk groups using genomics is essential for clinicians for pre-prevention treatment to improve the survival time for patients and identify the appropriate therapy strategies. This study proposes a multi-omics framework that can extract the features from various omics simultaneously. The framework employs autoencoders to learn the non-linear representation of the data and applies tensor analysis for feature learning. Further, the clustering method is used to stratify the patients into multiple cancer risk groups. Several omics were included in the experiments, namely methylation, somatic copy-number variation (SCNV), micro RNA (miRNA) and RNA sequencing (RNAseq) from two cancer types, including Glioma and Breast Invasive Carcinoma from the TCGA dataset. The results of this study are promising, as evidenced by the survival analysis and classification models, which outperformed the state-of-the-art. The patients can be significantly (p-value<0.05) divided into risk groups using extracted latent variables from the fused multi-omics data. The pipeline is open source to help researchers and clinicians identify the patients’ risk groups using genomics.

6 November 2017
Verified
Conference Paper
Open access
PDF file
Ali BrayteeAli Braytee
Ali Braytee
WLWei Liu
Wei Liu
DCDaniel R. Catchpoole
Daniel R. Catchpoole
PKPaul J. Kennedy
Paul J. Kennedy

6 March 2023 in Electronics
Verified
Journal Article
Open access
PDF file
XZXING ZI
XING ZI
KCKunal Chaturvedi
Kunal Chaturvedi
Ali BrayteeAli Braytee
Ali Braytee
JLJun Li
Jun Li
Mukesh PrasadMukesh Prasad
Mukesh Prasad
Falls are one the leading causes of accidental death for all people, but the elderly are at particularly high risk. Falls are severe issue in the care of those elderly people who live alone and have limited access to health aides and skilled nursing care. Conventional vision-based systems for fall detection are prone to failure in conditions with low illumination. Therefore, an automated system that detects falls in low-light conditions has become an urgent need for protecting vulnerable people. This paper proposes a novel vision-based fall detection system that uses object tracking and image enhancement techniques. The proposed approach is divided into two parts. First, the captured frames are optimized using a dual illumination estimation algorithm. Next, a deep-learning-based tracking framework that includes detection by YOLOv7 and tracking by the Deep SORT algorithm is proposed to perform fall detection. On the Le2i fall and UR fall detection (URFD) datasets, we evaluate the proposed method and demonstrate the effectiveness of fall detection in dark night environments with obstacles.