Natalia Ninkina

Dr. Natalia Ninkina

School of Biosciences, Cardiff University, Museum Avenue, Cardiff CF10 3AX, UK
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Research Focus & Metrics

Academic Career Length

32Years (1995-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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12 October 2016 in Journal of Neuroscience
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Journal Article
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MLMarthe H.R. Ludtmann
Marthe H.R. Ludtmann
PAPlamena R. Angelova
Plamena R. Angelova
NNNatalia Ninkina
Natalia Ninkina
SGSonia Gandhi
Sonia Gandhi
VBVladimir Buchman
Vladimir Buchman
AAANDREY Abramov
ANDREY Abramov
Misfolded α-synuclein is a key factor in the pathogenesis of Parkinson's disease (PD). However, knowledge about a physiological role for the native, unfolded α-synuclein is limited. Using brains of mice lacking α-, β-, and γ-synuclein, we report that extracellular monomeric α-synuclein enters neurons and localizes to mitochondria, interacts with ATP synthase subunit α, and modulates ATP synthase function. Using a combination of biochemical, live-cell imaging and mitochondrial respiration analysis, we found that brain mitochondria of α-, β-, and γ-synuclein knock-out mice are uncoupled, as characterized by increased mitochondrial respiration and reduced mitochondrial membrane potential. Furthermore, synuclein deficiency results in reduced ATP synthase efficiency and lower ATP levels. Exogenous application of low unfolded α-synuclein concentrations is able to increase the ATP synthase activity that rescues the mitochondrial phenotypes observed in synuclein deficiency. Overall, the data suggest that α-synuclein is a previously unrecognized physiological regulator of mitochondrial bioenergetics through its ability to interact with ATP synthase and increase its efficiency. This may be of particular importance in times of stress or PD mutations leading to energy depletion and neuronal cell toxicity.SIGNIFICANCE STATEMENTMisfolded α-synuclein aggregations in the form of Lewy bodies have been shown to be a pathological hallmark in histological staining of Parkinson's disease (PD) patient brains. It is known that misfolded α-synuclein is a key driver in PD pathogenesis, but the physiological role of unfolded monomeric α-synuclein remains unclear. Using neuronal cocultures and isolated brain mitochondria of α-, β-, and γ-synuclein knock-out mice and monomeric α-synuclein, this current study shows that α-synuclein in its unfolded monomeric form improves ATP synthase efficiency and mitochondrial function. The ability of monomeric α-synuclein to enhance ATP synthase efficiency under physiological conditions may be of importance when α-synuclein undergoes the misfolding and aggregation reported in PD.

1 August 2013 in Journal of Biological Chemistry
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TSTatyana A Shelkovnikova
Tatyana A Shelkovnikova
OPOwen M. Peters
Owen M. Peters
ADAlexey Deykin
Alexey Deykin
NCNatalie Connor-Robson
Natalie Connor-Robson
HRHannah Robinson
Hannah Robinson
NNNatalia Ninkina
Natalia Ninkina
Dysfunction of two structurally and functionally related proteins, FUS and TAR DNA-binding protein of 43 kDa (TDP-43), implicated in crucial steps of cellular RNA metabolism can cause amyotrophic lateral sclerosis (ALS) and certain other neurodegenerative diseases. The proteins are intrinsically aggregate-prone and form non-amyloid inclusions in the affected nervous tissues, but the role of these proteinaceous aggregates in disease onset and progression is still uncertain. To address this question, we designed a variant of FUS, FUS 1–359, which is predominantly cytoplasmic, highly aggregate-prone, and lacks a region responsible for RNA recognition and binding. Expression of FUS 1–359 in neurons of transgenic mice, at a level lower than that of endogenous FUS, triggers FUSopathy associated with severe damage of motor neurons and their axons, neuroinflammatory reaction, and eventual loss of selective motor neuron populations. These pathological changes cause abrupt development of a severe motor phenotype at the age of 2.5–4.5 months and death of affected animals within several days of onset. The pattern of pathology in transgenic FUS 1–359 mice recapitulates several key features of human ALS with the dynamics of the disease progression compressed in line with shorter mouse lifespan. Our data indicate that neuronal FUS aggregation is sufficient to cause ALS-like phenotype in transgenic mice.

10 April 2019 in Human Cell
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Journal Article
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NNNatalia Ninkina
Natalia Ninkina
MKMichail Kukharsky
Michail Kukharsky
MHMaria V. Hewitt
Maria V. Hewitt
ELEkaterina A. Lysikova
Ekaterina A. Lysikova
LSLarissa N. Skuratovska
Larissa N. Skuratovska
VBVladimir L. Buchman
Vladimir L. Buchman
Recent studies have demonstrated that breast milk contains a population of cells displaying many of the properties typical of stem cells. This review outlines progress made in this newly emerging field of stem cell biology and provides an analysis of the available data on purification, propagation and differentiation of certain types of progenitor cells from breast milk. The possible fates of breast milk cells, including microchimerism caused by their transmission to the distant organs of the infant, are also discussed. Unique properties of breast milk-derived stem cells, such as their unusually low tumorigenic potential and their negligible ability to form teratomas, are highlighted as obvious advantages for using these cells in regenerative therapy.

28 July 2017 in Scientific Reports
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Journal Article
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CGCyrille Garnier
Cyrille Garnier
FDFrancois Devred
Francois Devred
DBDeborah Byrne
Deborah Byrne
RPRémy Puppo
Rémy Puppo
ARAndrei Yu. Roman
Andrei Yu. Roman
PTPhillip O. Tsvetkov
Phillip O. Tsvetkov
Aggregation of TDP-43 (transactive response DNA binding protein 43 kDa) is a hallmark of certain forms of amyotrophic lateral sclerosis (ALS) and frontotemporal lobar degeneration (FTLD). Moreover, intracellular TDP-43-positive inclusions are often found in other neurodegenerative diseases. Recently it was shown that zinc ions can provoke the aggregation of endogenous TDP-43 in cells, allowing to assume a direct interaction of TDP-43 with zinc ions. In this work, we investigated zinc binding to the 102–269 TDP-43 fragment, which comprise the two RNA recognition motifs. Using isothermal titration calorimetry, mass spectrometry, and differential scanning fluorimetry, we showed that zinc binds to this TDP-43 domain with a dissociation constant in the micromolar range and modifies its tertiary structure leading to a decrease of its thermostability. Moreover, the study by dynamic light scattering and negative stain electron microscopy demonstrated that zinc ions induce auto-association process of this TDP-43 fragment into rope-like structures. These structures are thioflavin-T-positive allowing to hypothesize the direct implication of zinc ions in pathological aggregation of TDP-43.

1 January 2013 in Molecular Neurodegeneration
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Journal Article
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VBVladimir Buchman
Vladimir Buchman
JCJohnathan Cooper-Knock
Johnathan Cooper-Knock
NCNatalie Connor-Robson
Natalie Connor-Robson
AHAdrian Higginbottom
Adrian Higginbottom
JKJanine Kirby
Janine Kirby
PSPamela Jean Shaw
Pamela Jean Shaw
Sizing of GGGGCC hexanucleotide repeat expansions within the C9ORF72 locus, which account for approximately 10% of all amyotrophic lateral sclerosis (ALS) cases, is urgently required to answer fundamental questions about mechanisms of pathogenesis in this important genetic variant. Currently employed PCR protocols are limited to discrimination between the presence and absence of a modified allele with more than 30 copies of the repeat, while Southern hybridisation-based methods are confounded by the somatic heterogeneity commonly present in blood samples, which might cause false-negative or ambiguous results.

1 February 2019 in Journal of Molecular Biology
Verified
Journal Article
Closed access
ARAndrei Yu. Roman
Andrei Yu. Roman
FDFrancois Devred
Francois Devred
DBDeborah Byrne
Deborah Byrne
RRRomain La Rocca
Romain La Rocca
NNNatalia Ninkina
Natalia Ninkina
PTPhillip O. Tsvetkov
Phillip O. Tsvetkov