Ryan D Cohen

Ryan D Cohen


Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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7 August 2020 in Science
Verified
Journal Article
Closed access
MMMichael Meanwell
Michael Meanwell
SSSteven M. Silverman
Steven M. Silverman
JLJohannes Lehmann
Johannes Lehmann
BABharanishashank Adluri
Bharanishashank Adluri
YWYang Wang
Yang Wang
RBRobert Britton
Robert Britton
Short path to a complex ring: Nucleotide analogs are valuable tools and therapeutics because of their ability to interfere with processes such as DNA synthesis, which are vital to rapidly dividing cells and replicating viruses. These molecules are challenging to synthesize chemically. Meanwell et al. developed a “ribose last” synthetic strategy in which a fluorinated acyclic nucleic acid is formed by an l - or d -proline–catalyzed aldol reaction (see the Perspective by Miller). This intermediate can then be cyclized to yield the nucleic acid analog in one pot with control of anomeric conformation based on cyclization conditions. Nucleotide analogs accessible by this strategy include those with modifications at C2′ and C4′, purines and pyrimidines, and locked and protected products. Science , this issue p. 725 ; see also p. 623

16 November 2021 in Journal of the American Chemical Society
Verified
Journal Article
Closed access
XGXin Gao
Xin Gao
JTJoshua R. Turek-Herman
Joshua R. Turek-Herman
YCYoung Joo Choi
Young Joo Choi
RCRyan D Cohen
Ryan D Cohen
THTodd K. Hyster
Todd K. Hyster

15 October 2019 in Angewandte Chemie International Edition
Verified
Journal Article
Closed access
PDF file
VAVictor Adebomi
Victor Adebomi
RCRyan D Cohen
Ryan D Cohen
RWRachel Wills
Rachel Wills
HCHolland Andrew Hays Chavers
Holland Andrew Hays Chavers
GMGary E. Martin
Gary E. Martin
MRMonika Raj
Monika Raj

7 November 2019 in Chemical Science
Verified
Journal Article
Open access
PDF file
YSYonnette E. Sim
Yonnette E. Sim
ONOgonna Nwajiobi
Ogonna Nwajiobi
SMSriram Mahesh
Sriram Mahesh
RCRyan D Cohen
Ryan D Cohen
MRMikhail Y. Reibarkh
Mikhail Y. Reibarkh
MRMonika Raj
Monika Raj
Secondary amine selective Petasis (SASP) bioconjugation for the selective labeling of peptides and proteins with N-terminal secondary amines.

24 September 2018 in Journal of the American Chemical Society
Verified
Journal Article
Closed access
DLDan Lehnherr
Dan Lehnherr
YJYining Ji
Yining Ji
ANAndrew J. Neel
Andrew J. Neel
RCRyan D Cohen
Ryan D Cohen
ABAndrew P. J. Brunskill
Andrew P. J. Brunskill
MRMikhail Reibarkh
Mikhail Reibarkh

7 March 2023 in Molecules
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Journal Article
Open access
PDF file
RCRyan D Cohen
Ryan D Cohen
Jared Scott WoodJared Scott Wood
Jared Scott Wood
YLYu Hong Lam
Yu Hong Lam
ABAlexei Buevich
Alexei Buevich
ESEdward Sherer
Edward Sherer
GMGary E Martin
Gary E Martin
Density functional theory (DFT) benchmark studies of 1H and 13C NMR chemical shifts often yield differing conclusions, likely due to non-optimal test molecules and non-standardized data acquisition. To address this issue, we carefully selected and measured 1H and 13C NMR chemical shifts for 50 structurally diverse small organic molecules containing atoms from only the first two rows of the periodic table. Our NMR dataset, DELTA50, was used to calculate linear scaling factors and to evaluate the accuracy of 73 density functionals, 40 basis sets, 3 solvent models, and 3 gauge-referencing schemes. The best performing DFT methodologies for 1H and 13C NMR chemical shift predictions were WP04/6-311++G(2d,p) and ωB97X-D/def2-SVP, respectively, when combined with the polarizable continuum solvent model (PCM) and gauge-independent atomic orbital (GIAO) method. Geometries should be optimized at the B3LYP-D3/6-311G(d,p) level including the PCM solvent model for the best accuracy. Predictions of 20 organic compounds and natural products from a separate probe set had root-mean-square deviations (RMSD) of 0.07 to 0.19 for 1H and 0.5 to 2.9 for 13C. Maximum deviations were less than 0.5 and 6.5 ppm for 1H and 13C, respectively.