DNA-binding proteins (DBPs) play a significant role in all phases of genetic processes, including DNA recombination, repair, and modification. They are often utilized in drug discovery as fundamental elements of steroids, antibiotics, and anticancer drugs. Predicting them poses the most challenging task in proteomics research. Conventional experimental methods for DBP identification are costly and sometimes biased toward prediction. Therefore, developing powerful computational methods that can accurately and rapidly identify DBPs from sequence information is an urgent need. In this study, we propose a novel deep learning-based method called Deep-WET to accurately identify DBPs from primary sequence information. In Deep-WET, we employed three powerful feature encoding schemes containing Global Vectors, Word2Vec, and fastText to encode the protein sequence. Subsequently, these three features were sequentially combined and weighted using the weights obtained from the elements learned through the differential evolution (DE) algorithm. To enhance the predictive performance of Deep-WET, we applied the SHapley Additive exPlanations approach to remove irrelevant features. Finally, the optimal feature subset was input into convolutional neural networks to construct the Deep-WET predictor. Both cross-validation and independent tests indicated that Deep-WET achieved superior predictive performance compared to conventional machine learning classifiers. In addition, in extensive independent test, Deep-WET was effective and outperformed than several state-of-the-art methods for DBP prediction, with accuracy of 78.08%, MCC of 0.559, and AUC of 0.805. This superior performance shows that Deep-WET has a tremendous predictive capacity to predict DBPs. The web server of Deep-WET and curated datasets in this study are available athttps://deepwet-dna.monarcatechnical.com/. The proposed Deep-WET is anticipated to serve the community-wide effort for large-scale identification of potential DBPs.

Oral cancer (OC) remains a major global health concern with survival often limited by late diagnosis. Early and accurate detection is essential to improve patient outcomes and guide treatment decisions. In this study we propose a computer aided diagnostic (CAD) framework for classifying oral squamous cell carcinoma from histopathology images. The model combines Swin transformer for hierarchical feature extraction with vision transformer (ViT) to capture long range dependencies across image regions. SHapley Additive exPlanations (SHAP) based feature selection enhances interpretability by highlighting the most informative features while preprocessing steps such as stain normalization and contrast enhancement improve model generalization and reduce sample variability. Evaluated on a publicly available dataset the framework achieved 99.25% accuracy (ACC) 99.21% sensitivity and a matthews correlation coefficient (MCC) of 98.21% outperforming existing methods. Ablation studies highlighted the importance of positional encoding and statistical analyses confirmed the robustness and reliability of results. To support real-time inference and scalable deployment the proposed model has been integrated into a FastAPI-based web application. This framework offers a powerful interpretable and practical tool for early OC detection and has potential for integration into routine clinical workflows.

Due to conventional endocrinological methods, there is presently no shared work available, and no therapeutic options have been demonstrated in oral cancer (OC) and periodontal disease (PD), type 2 diabetes (T2D), and obese patients. The aim of this study is to determine the similar molecular pathways and potential therapeutic targets in PD, OC, T2D, and obesity that may be used to anticipate the progression of the disease. Four Gene Expression Omnibus (GEO) microarray datasets (GSE29221, GSE15773, GSE16134, and GSE13601) are used for finding differentially expressed genes (DEGs) for T2D, obese, and PD patients with OC in order to explore comparable pathways and therapeutic medications. Gene ontology (GO) and pathway analysis were used to investigate the functional annotations of the genes. The hub genes were then identified using protein-protein interaction (PPI) networks, and the most significant PPI components were evaluated using a clustering approach. These three gene expression-based datasets yielded a total of seven common DEGs. According to the GO annotation, the majority of the DEGs were connected with the microtubule cytoskeleton structure involved in mitosis. The KEGG pathways revealed that the concordant DEGs are connected to the cell cycle and progesterone-mediated oocyte maturation. Based on topological analysis of the PPI network, major hub genes (CCNB1, BUB1, TTK, PLAT, and AHNAK) and notable modules were revealed. This work additionally identified the connection of TF genes and miRNAs with common DEGs, as well as TF activity. Predictive drug analysis yielded concordant drug compounds involved with T2D, OC, PD, and obesity disorder, which might be beneficial for examining the diagnosis, treatment, and prognosis of metabolic disorders and Oral cancer.

Monkeypox (Mpox) is a viral disease that has garnered global attention due to its human-to-human transmissibility and cross-species transmission. Recent outbreaks in both endemic and non-endemic regions highlight the urgent need to elucidate its molecular mechanisms and evolutionary dynamics. As of now, there are no approved antiviral therapies available for the treatment of Mpox. In this work, we proposed a robust machine learning (ML) and bioinformatics approach to uncover candidate biomarkers associated with Mpox. Two microarray datasets and one RNA-seq dataset were analyzed to screen an initial panel of genes according to p-values. A two-stage feature selection pipeline based on Fisher Score (FS) and Recursive Feature Elimination (RFE) was implemented on the selected gene set. The resulting optimized gene group was subsequently input into our suggested Multilayer Perceptron (MLP) model, which demonstrated superior classification accuracy compared to other classifiers. A total of 33 shared genes were discovered between the differentially expressed genes (DEGs) and the final selected group. Gene Ontology (GO) and KEGG signaling pathway analysis revealed critical biological functions and signaling pathways linked to the common genes. A protein–protein interaction (PPI) network analysis revealed 10 key genes. Regulatory network analysis, incorporating TF-gene and TF-miRNA interactions, highlighted five hub genes with strong associations with regulatory mechanisms. Additionally, molecular docking revealed that ATG3, TRIM14, and DUOX1 exhibited strong interactions with therapeutic compounds. These results indicate that the discovered hub genes may serve as potential candidates for prompt detection, prognosis, and therapeutic targeting in Mpox infection.