Taxonomic diversity of Lake Baikal bacteria during the period of massive under-ice development of dinoflagellate Gymnodinium baicalense was studied. During the ice-covered period in 2013, both the abundance and biomass of G. baicalense were several orders of magnitude higher than the values for previous years, the maximum values were 8.9 × 10⁶ cells/L and 405 g/m³, respectively. The taxonomic structure of bacterial communities was determined using the data obtained by 454 pyrosequencing (Roche) with Mothur 1.19.0. Predominance of three phyla was revealed: Bacteroidetes, Proteobacteria, and Actinobacteria. Massive dinoflagellate development resulted in a considerable decrease in the richness and diversity of bacterial communities compared to the results of the earlier long-term studies.

In an aquatic ecosystem, the supply of nutrients is essential for the biogeochemical cycle, and it affects the taxonomic composition of the microbial communities. Here, by using high-throughput sequencing (HTS) of the 16S and 18S rRNA gene fragments, we compared free-living (FL) and particle-associated (PA) bacterial communities and microeukaryotic communities in the areas with different nutrient intakes in freshwater Lake Baikal during the ice-covered and summer periods. Samples were taken at the inflow of the Selenga River, which is the main tributary of the lake, and at several established coastal research stations. The metabolic potential of the bacterial communities was predicted using PICRUSt. Differences were found in both FL and PA communities of the river mouth compared to the photic zone of the lake. The composition of FL communities was significantly different between the sampling sites in the ice-covered period, which is most likely influenced by different hydrochemical conditions. In contrast, the PA communities were more similar during the ice-covered period, but they changed considerably from spring to summer and their diversity increased. The diversity of the microeukaryotic communities also increased in summer, which may have contributed to the increase in bacterial diversity. In co-occurrence networks analysis, the number of interconnected bacterial OTUs in FL exceeded those for PA. The FL communities were dominated by Actinobacteriota, while the major PA OTUs belonged to a mixed cluster, which were mainly assigned to the phyla Bacteroidota and Verrucomicrobiota. As a result, PA communities were enriched in pathways responsible for the metabolism of sulfur, fucose, cellulose and urea. Our results confirm the difference between the FL and PA bacterial communities in Lake Baikal. These results also highlight the complex pattern of interactions between bacteria and microeukaryotes in a natural freshwater ecosystem across spatial and temporal scales.

Two new species of silica-scaled chrysophytes (order Synurales) from the genus Mallomonas and sections Striatae Mallomonas baicalensis sp. nov. and M. grachevii sp. nov. found at the bottom surface of the ice of Lake Baikal, with a structure of siliceous scales, are described using electron microscopy. The main and unique distinctive feature of M. baicalensis is its dome with a long spine and the slightly asymmetrical shape of its scales, regardless of their position on the cell. We could not find the bristles, and if there are spines on the dome, we can assume that they may be missing. The main distinguishing feature of M. grachevii is the presence of a secondary layer on the shield except at the angle of the V-rib, in which an area without the secondary layer, a “window”, is present with numerous pores, and the first transverse rib closest to the dome is thickened. Among the Mallomonas species from the section Striatae, only M. siveri and M. baicalensis have a group of rimmed pores in the corner of the V-rib. As a result of our research, the number of Mallomonas species of the section Striatae found in Lake Baikal has increased to eight, of which, in addition to the new species, only one species is widespread, and the rest are rare, previously foundin oligotrophic/mountain water bodies.