Alena Kopytova

Ms. Alena Kopytova

orcid

Research Focus & Metrics

Representative Publications

View All Publications
1 March 2021 in Parkinsonism & Related Disorders
Verified
Journal Article
Closed access
AKAlena Kopytova
Alena Kopytova
GRG.N. Rychkov
G.N. Rychkov
MNM.A. Nikolaev
M.A. Nikolaev
GBG.V. Baydakova
G.V. Baydakova
ACA.A. Cheblokov
A.A. Cheblokov
SPS.N. Pchelina
S.N. Pchelina

Verified
Journal Article
Open access
PDF file
EGElena Grigor'eva
Elena Grigor'eva
AKAlena Kopytova
Alena Kopytova
ЕЯЕлена Яркова
Елена Яркова
SPSophia Pavlova
Sophia Pavlova
DSDiana A. Sorogina
Diana A. Sorogina
SZSuren Zakian
Suren Zakian
GBA variants increase the risk of Parkinson’s disease (PD) by 10 times. The GBA gene encodes the lysosomal enzyme glucocerebrosidase (GCase). The p.N370S substitution causes a violation of the enzyme conformation, which affects its stability in the cell. We studied the biochemical characteristics of dopaminergic (DA) neurons generated from induced pluripotent stem cells (iPSCs) from a PD patient with the GBA p.N370S mutation (GBA-PD), an asymptomatic GBA p.N370S carrier (GBA-carrier), and two healthy donors (control). Using liquid chromatography with tandem mass spectrometry (LC-MS/MS), we measured the activity of six lysosomal enzymes (GCase, galactocerebrosidase (GALC), alpha-glucosidase (GAA), alpha-galactosidase (GLA), sphingomyelinase (ASM), and alpha-iduronidase (IDUA)) in iPSC-derived DA neurons from the GBA-PD and GBA-carrier. DA neurons from the GBA mutation carrier demonstrated decreased GCase activity compared to the control. The decrease was not associated with any changes in GBA expression levels in DA neurons. GCase activity was more markedly decreased in the DA neurons of GBA-PD patient compared to the GBA-carrier. The amount of GCase protein was decreased only in GBA-PD neurons. Additionally, alterations in the activity of the other lysosomal enzymes (GLA and IDUA) were found in GBA-PD neurons compared to GBA-carrier and control neurons. Further study of the molecular differences between the GBA-PD and the GBA-carrier is essential to investigate whether genetic factors or external conditions are the causes of the penetrance of the p.N370S GBA variant.

29 September 2021 in Genes
Verified
Journal Article
Open access
PDF file
TUTatiana Usenko
Tatiana Usenko
ABAnastasia Bezrukova
Anastasia Bezrukova
KBKaterina Basharova
Katerina Basharova
APAlexandra Panteleeva
Alexandra Panteleeva
MNMikhael Nikolaev
Mikhael Nikolaev
SPSofia Pchelina
Sofia Pchelina
Mutations of the GBA gene, encoding for lysosomal enzyme glucocerebrosidase (GCase), are the greatest genetic risk factor for Parkinson’s disease (PD) with frequency between 5% and 20% across the world. N370S and L444P are the two most common mutations in the GBA gene. PD carriers of severe mutation L444P in the GBA gene is characterized by the earlier age at onset compared to N370S. Not every carrier of GBA mutations develop PD during one’s lifetime. In the current study we aimed to find common gene expression signatures in PD associated with mutation in the GBA gene (GBA-PD) using RNA-seq. We compared transcriptome of monocyte-derived macrophages of 5 patients with GBA-PD (4 L444P/N, 1 N370S/N) and 4 asymptomatic GBA mutation carriers (GBA-carriers) (3 L444P/N, 1 N370S/N) and 4 controls. We also conducted comparative transcriptome analysis for L444P/N only GBA-PD patients and GBA-carriers. Revealed deregulated genes in GBA-PD independently of GBA mutations (L444P or N370S) were involved in immune response, neuronal function. We found upregulated pathway associated with zinc metabolism in L444P/N GBA-PD patients. The potential important role of DUSP1 in the pathogenesis of GBA-PD was suggested.

Verified
Journal Article
Open access
PDF file
AKAlena Kopytova
Alena Kopytova
GRGeorgy N. Rychkov
Georgy N. Rychkov
ACAlexander A. Cheblokov
Alexander A. Cheblokov
EGElena Grigor'eva
Elena Grigor'eva
MNMikhael Nikolaev
Mikhael Nikolaev
AEAnton K. Emelyanov
Anton K. Emelyanov
Mutations in the GBA1 gene, encoding the lysosomal enzyme glucocerebrosidase (GCase), cause Gaucher disease (GD) and are the most common genetic risk factor for Parkinson’s disease (PD). Pharmacological chaperones (PCs) are being developed as an alternative treatment approach for GD and PD. To date, NCGC00241607 (NCGC607) is one of the most promising PCs. Using molecular docking and molecular dynamics simulation we identified and characterized six allosteric binding sites on the GCase surface suitable for PCs. Two sites were energetically more preferable for NCGC607 and located nearby to the active site of the enzyme. We evaluated the effects of NCGC607 treatment on GCase activity and protein levels, glycolipids concentration in cultured macrophages from GD (n = 9) and GBA-PD (n = 5) patients as well as in induced human pluripotent stem cells (iPSC)—derived dopaminergic (DA) neurons from GBA-PD patient. The results showed that NCGC607 treatment increased GCase activity (by 1.3-fold) and protein levels (by 1.5-fold), decreased glycolipids concentration (by 4.0-fold) in cultured macrophages derived from GD patients and also enhanced GCase activity (by 1.5-fold) in cultured macrophages derived from GBA-PD patients with N370S mutation (p < 0.05). In iPSC-derived DA neurons from GBA-PD patients with N370S mutation NCGC607 treatment increased GCase activity and protein levels by 1.1-fold and 1.7-fold (p < 0.05). Thus, our results showed that NCGC607 could bind to allosteric sites on the GCase surface and confirmed its efficacy on cultured macrophages from GD and GBA-PD patients as well as on iPSC-derived DA neurons from GBA-PD patients.

15 June 2021 in Acta Naturae
Verified
Journal Article
Open access
PDF file
KSKonstantin A. Senkevich
Konstantin A. Senkevich
AKAlena Kopytova
Alena Kopytova
TUTatiana S. Usenko
Tatiana S. Usenko
AEAnton K. Emelyanov
Anton K. Emelyanov
SPSofia Pchelina
Sofia Pchelina
Parkinsons disease (PD) is a multifactorial neurodegenerative disease. To date, genome-wide association studies have identified more than 70 loci associated with the risk of PD. Variants in the GBA gene encoding glucocerebrosidase are quite often found in PD patients in all populations across the world, which justifies intensive investigation of this gene. A number of biochemical features have been identified in patients with GBA-associated Parkinsons disease (GBA-PD). In particular, these include decreased activity of glucocerebrosidase and accumulation of the glucosylceramide substrate. These features were the basis for putting forward a hypothesis about treatment of GBA-PD using new strategies aimed at restoring glucocerebrosidase activity and reducing the substrate concentration. This paper discusses the molecular and genetic mechanisms of GBA-PD pathogenesis and potential approaches to the treatment of this form of the disease.

1 January 2021 in Neuroscience Letters
Verified
Journal Article
Closed access
TUTatiana Usenko
Tatiana Usenko
ABA.I. Bezrukova
A.I. Bezrukova
DBD.A. Bogdanova
D.A. Bogdanova
AKAlena Kopytova
Alena Kopytova
KSK.A. Senkevich
K.A. Senkevich
SPS.N. Pchelina
S.N. Pchelina