Dmitry Yanvarev

Dr. Dmitry Yanvarev


Research Focus & Metrics

Academic Career Length

20Years (2007-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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6 March 2020 in Biomolecules
Verified
Journal Article
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MHMervi T Hyvonen
Mervi T Hyvonen
TKTuomo Keinänen
Tuomo Keinänen
GNGulgina K. Nuraeva
Gulgina K. Nuraeva
DYDmitry Yanvarev
Dmitry Yanvarev
MKMaxim Khomutov
Maxim Khomutov
AKAlex Khomutov
Alex Khomutov
The biogenic polyamines, spermine, spermidine (Spd) and putrescine (Put) are present at micro-millimolar concentrations in eukaryotic and prokaryotic cells (many prokaryotes have no spermine), participating in the regulation of cellular proliferation and differentiation. In mammalian cells Put is formed exclusively from L-ornithine by ornithine decarboxylase (ODC) and many potent ODC inhibitors are known. In bacteria, plants, and fungi Put is synthesized also from agmatine, which is formed from L-arginine by arginine decarboxylase (ADC). Here we demonstrate that the isosteric hydroxylamine analogue of agmatine (AO-Agm) is a new and very potent (IC50 3•10−8 M) inhibitor of E. coli ADC. It was almost two orders of magnitude less potent towards E. coli ODC. AO-Agm decreased polyamine pools and inhibited the growth of DU145 prostate cancer cells only at high concentration (1 mM). Growth inhibitory analysis of the Acremonium chrysogenum demonstrated that the wild type (WT) strain synthesized Put only from L-ornithine, while the cephalosporin C high-yielding strain, in which the polyamine pool is increased, could use both ODC and ADC to produce Put. Thus, AO-Agm is an important addition to the set of existing inhibitors of the enzymes of polyamine biosynthesis, and an important instrument for investigating polyamine biochemistry.

1 February 2014 in European Journal of Medicinal Chemistry
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Journal Article
Closed access
JAJulia Agapkina
Julia Agapkina
DYDmitry Yanvarev
Dmitry Yanvarev
AAAndrey Anisenko
Andrey Anisenko
SKSergey Korolev
Sergey Korolev
JVJouko Vepsäläinen
Jouko Vepsäläinen
MGMarina Gottikh
Marina Gottikh

1 September 2016 in Data in Brief
Verified
Journal Article
Open access
DYDmitry Yanvarev
Dmitry Yanvarev
AKA.N. Korovina
A.N. Korovina
NUN.N. Usanov
N.N. Usanov
OKO.A. Khomich
O.A. Khomich
JVJ. Vepsäläinen
J. Vepsäläinen
SKS.N. Kochetkov
S.N. Kochetkov
Inorganic pyrophosphate (PPi) mimetics designed on a basis of methylenediphosphonic acid backbone are promising inhibitors of two key HIV replication enzymes, IN [1] and RT [2]. Herein, we present chemical synthesis of eleven methylenebisphosphonates (BPs) with their NMR and HRMS analysis synthesized via five different ways. Also, we present data on inhibition of HIV RT catalyzed phosphorolysis and polymerization by synthesized BPs using two methods based on denaturing urea PAGE. Tests were also performed for thymidine analogue mutations reverse transcriptase (TAM RT), which was expressed and purified for that. Structure-activity relationships and inhibitory activity data of synthesized BPs are presented in "Methylene bisphosphonates as the inhibitors of HIV RT phosphorolytic activity" [2].

26 November 2007 in Nucleosides, Nucleotides & Nucleic Acids
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Journal Article
Closed access
DYDmitry Yanvarev
Dmitry Yanvarev
ESElena A. Shirokova
Elena A. Shirokova
MAMaria V. Astapova
Maria V. Astapova
VSVyacheslav I. Shram
Vyacheslav I. Shram
MKMarina K. Kukhanova
Marina K. Kukhanova
YSYury S. Skoblov
Yury S. Skoblov
An effective synthesis of 5′-carbamoylphosphonyl-[6-3H]-AZT was developed from [6-3H]-AZT.For the synthesized compound, chemical and enzymatic stability were determined and its penetrationa cross HL-60 cell membranes was studied.

23 June 2017 in Molecules
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Journal Article
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OKOlga Khomich
Olga Khomich
DYDmitry Yanvarev
Dmitry Yanvarev
RNRoman Novikov
Roman Novikov
AKAlexey Kornev
Alexey Kornev
EPElina Puljulla
Elina Puljulla
SKSergey Kochetkov
Sergey Kochetkov
Derivatives of methylenediphosphonic acid possess wide spectra of biological activities and are used in enzymology as research tools as well as in practical medicine. Carbonyl diphosphonic acid is a promising starting building block for synthesis of functionally substituted methylenediphosphonates. Investigation of the interaction of carbonyl diphosphonic acid with hydroxylamine clearly demonstrates that it is impossible to isolate oxime within the pH range 2–12, while only cyanophosphonic and phosphoric acids are the products of the fast proceeding Beckmann-like fragmentation. In the case of O-alkylhydroxylamines, corresponding alcohols are found in the reaction mixtures in addition to cyanophosphonic and phosphoric acids. Therefore, two residues of phosphonic acid being attached to a carbonyl group provide new properties to this carbonyl group, making its oximes very unstable. This principally differs carbonyl diphosphonic acid from structurally related phosphonoglyoxalic acid and other α-ketophosphonates.