Synchronization or phase-locking between oscillating neuronal groups is considered to be important for coordination of information among cortical networks. Spectral coherence is a commonly used approach to quantify phase locking between neural signals. We systematically explored the validity of spectral coherence measures for quantifying synchronization among neural oscillators. To that aim, we simulated coupled oscillatory signals that exhibited synchronization dynamics using an abstract phase-oscillator model as well as interacting gamma-generating spiking neural networks. We found that, within a large parameter range, the spectral coherence measure deviated substantially from the expected phase-locking. Moreover, spectral coherence did not converge to the expected value with increasing signal-to-noise ratio. We found that spectral coherence particularly failed when oscillators were in the partially (intermittent) synchronized state, which we expect to be the most likely state for neural synchronization. The failure was due to the fast frequency and amplitude changes induced by synchronization forces. We then investigated whether spectral coherence reflected the information flow among networks measured by transfer entropy (TE) of spike trains. We found that spectral coherence failed to robustly reflect changes in synchrony-mediated information flow between neural networks in many instances. As an alternative approach we explored a phase-locking value (PLV) method based on the reconstruction of the instantaneous phase. As one approach for reconstructing instantaneous phase, we used the Hilbert Transform (HT) preceded by Singular Spectrum Decomposition (SSD) of the signal. PLV estimates have broad applicability as they do not rely on stationarity, and, unlike spectral coherence, they enable more accurate estimations of oscillatory synchronization across a wide range of different synchronization regimes, and better tracking of synchronization-mediated information flow among networks.
Background: While single‐omics analyses on human atherosclerotic plaque have been very useful to map stage‐ or disease‐related differences in expression, they only partly capture the array of changes in this tissue and suffer from scale‐intrinsic limitations. In order to better identify processes associated with intraplaque hemorrhage and plaque instability, we therefore combined multiple omics into an integrated model.Methods: In this study, we compared protein and gene makeup of low‐ versus high‐risk atherosclerotic lesion segments from carotid endarterectomy patients, as judged from the absence or presence of intraplaque hemorrhage, respectively. Transcriptomic, proteomic, and peptidomic data of this plaque cohort were aggregated and analyzed by DIABLO, an integrative multivariate classification and feature selection method.Results: We identified a protein‐gene associated multiomics model able to segregate stable, nonhemorrhaged from vulnerable, hemorrhaged lesions at high predictive performance (AUC >0.95). The dominant component of this model correlated with αSMA−PDGFRα+fibroblast‐like cell content (p = 2.4E‐05) and Arg1+macrophage content (p = 2.2E‐04) and was driven by serum response factor (SRF), possibly in a megakaryoblastic leukemia‐1/2 (MKL1/2) dependent manner. Gene set overrepresentation analysis on the selected key features of this model pointed to a clear cardiovascular disease signature, with overrepresentation of extracellular matrix synthesis and organization, focal adhesion, and cholesterol metabolism terms, suggestive of the model's relevance for the plaque vulnerability. Finally, we were able to corroborate the predictive power of the selected features in several independent mRNA and proteomic plaque cohorts.Conclusions: In conclusion, our integrative omics study has identified an intraplaque hemorrhage‐associated cardiovascular signature that provides excellent stratification of low‐ from high‐risk carotid artery plaques in several independent cohorts. Further study revealed suppression of an SRF‐regulated disease network, controlling lesion stability, in vulnerable plaque, which can serve as a scaffold for the design of targeted intervention in plaque destabilization.
30 August 2011 in IEEE Transactions on Circuits and Systems I: Regular Papers
Signal processing by means of analog circuits offers advantages from a power consumption viewpoint. A method is described to implement wavelets in analog circuits by fitting the impulse response of a linear system to the time-reversed wavelet function. The fitting is performed using local search involving an L2 criterion, starting from a deterministic starting point. This approach offers a large performance increase over previous Padé-based approaches and allows for the circuit implementation of a larger range of wavelet functions. Subsequently, using state-space optimization the dynamic range of the circuit is optimized. Finally, to illustrate the design procedure, a sixth-order L2-approximated orthonormal Gaussian wavelet filter using Gm-C integrators is presented.
Local field potentials (LFPs) represent the relatively slow varying components of the neural signal, and their analysis is instrumental in understanding normal brain function. To be properly analyzed, this signal needs to be separated in its fundamental frequency bands. Recent studies have shown that empirical mode decomposition (EMD) can be exploited to pre-process LFP recordings in order to achieve a proper separation. However, depending on the analyzed signal, EMD is known to generate components that may cover a too wide frequency range to be considered as narrow banded. As an alternative, we present here an improved version of the singular spectrum analysis (SSA) algorithm, validated by numerical simulations, and applied to LFP recordings in V1 of a macaque monkey exposed to simple visual stimuli. The components generated by the improved SSA algorithm are shown to be more meaningful than those generated by EMD, paving the way for its use in LFP analysis.