The present study investigated the dynamic changes in vitamin E and gene expression within its biosynthetic pathway during three germination periods of four brown rice cultivars with different seed coat colors. The results reveal that the vitamin E content increased during the germination process of all brown rice cultivars. Moreover, the content of α-tocopherol, α-tocotrienol, and β-tocopherol significantly increased at the later stage of germination. The expression levels of DXS1 and γ-TMT genes in all cultivars were significantly increased, whilst the HGGT gene expression levels of G6 and XY cultivars increased significantly at the later stage of brown rice germination. In addition, the expression levels of MPBQ/MT2 in G1 and G6 cultivars, and TC expression levels in G2 and G6 cultivars were substantially increased at the later stage of germination. Overall, the up-regulation of MPBQ/MT2, γ-TMT, and TC genes doubled the content of α-tocopherol, α-tocotrienol, and β-tocopherol, and the total vitamin E content of brown rice was at its highest at 96HAT. The utilization of the germination period can effectively improve the nutritional value of brown rice, which can be used for the development and utilization of brown rice for healthy rice products.

Waxy corn kernels with different colors have high phenolic content and good application potential in medicine and food healthcare. In our work, the content changes of phenolic and anthocyanins profiles were related to genes in the anthocyanin biosynthesis pathway, and the antioxidant activities of three different colors of waxy corn kernels (black, white, and yellow) were determined during kernel development. Results showed that growing temperature and light intensity could affect the accumulation of phytochemicals and antioxidant activities in waxy corns during maturation. Phenolic and antioxidant activities decreased over kernel maturation, and spring had higher nutrition levels during the best harvest time (20 and 25 days after pollination in the spring and autumn, respectively) for waxy corns. Cyanidin-3-O-glucoside and pelargonidin-3-O-glucoside were the main anthocyanins detected in the black waxy corns. The contents of cyanidin are higher than pelargonidin followed by peonidin in the autumn, while on the other hand, pelargonidin had a slightly higher content compared to cyanidin in the spring. DFR, CF1, and ANS were the key genes affecting anthocyanin accumulation. This work provided information on the best harvest time for the pigment of waxy corn in order to achieve relatively high phenolic profiles and antioxidant activities. It also illustrated the possible relationship between weather conditions, gene expression levels, and phenolic content during kernel development.

Seed vigor critically determines sowing performance, while grain quality fundamentally influences commercial value. Elucidating the genetic mechanisms governing these traits is critical for enhancing both seed vigor and grain quality in rice cultivation. Here, we demonstrate that the endosperm-specific gene OsEnS-42 is highly expressed in germinating seeds and developing seeds at the early filling stage. OsEnS-42 is localized in the nucleus and cytoplasm. The seed vigor of OsEnS-42 knockout plants decreased, manifested as decreases in germination rate, seedling length, and root length. In addition, OsEnS-42 knockout plants showed increased chalkiness and amylose content. The transcriptome and physiological indicators showed that OsEnS-42 regulates seed vigor through soluble sugars and redox metabolism, and regulates grain quality via soluble sugars and seed development-related enzymes. Haplotype analysis of OsEnS-42 across global rice germplasm revealed four distinct haplotypes (Hap 1–4) with subspecies-specific distributions. Crucially, accessions with Hap 4 exhibit a lower percentage of grain with chalkiness than accessions with Hap 1 (predominantly indica), enabling marker-assisted introgression to reduce chalkiness without subspecies barriers. Meanwhile, accessions with Hap 2 show lower amylose content, providing targets for specialty rice breeding. Our findings elucidate the pathways through which OsEnS-42 regulates seed vigor and grain quality, and provide new molecular breeding targets for improving seed vigor and grain quality in rice.