Elizabeth R Villota

Dr. Elizabeth R Villota


Research Focus & Metrics

Academic Career Length

22Years (2005-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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5 August 2015 in Systems and Synthetic Biology
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Journal Article
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SCSebastian M. Castillo-Hair
Sebastian M. Castillo-Hair
EVElizabeth R Villota
Elizabeth R Villota
ACAlberto M. Coronado
Alberto M. Coronado
Oscillatory responses are ubiquitous in regulatory networks of living organisms, a fact that has led to extensive efforts to study and replicate the circuits involved. However, to date, design principles that underlie the robustness of natural oscillators are not completely known. Here we study a three-component enzymatic network model in order to determine the topological requirements for robust oscillation. First, by simulating every possible topological arrangement and varying their parameter values, we demonstrate that robust oscillators can be obtained by augmenting the number of both negative feedback loops and positive autoregulations while maintaining an appropriate balance of positive and negative interactions. We then identify network motifs, whose presence in more complex topologies is a necessary condition for obtaining oscillatory responses. Finally, we pinpoint a series of simple architectural patterns that progressively render more robust oscillators. Together, these findings can help in the design of more reliable synthetic biomolecular networks and may also have implications in the understanding of other oscillatory systems.

9 December 2020 in IEEE Transactions on Neural Systems and Rehabilitation Engineering
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Journal Article
Closed access
JDJuan M. Chau Delgado
Juan M. Chau Delgado
DADavid Achanccaray
David Achanccaray
EVElizabeth R Villota
Elizabeth R Villota
SCSylvain Chevallier
Sylvain Chevallier
The P300 wave is commonly used in Brain-Computer Interface technology due to its higher bit rates when compared to other BCI paradigms. P300 classification pipelines based on Riemannian Geometry provide accuracies on par with state-of-the-art pipelines, without having the need for spatial filters, and also possess the ability to be calibrated with little data. In this study, five different P300 detection pipelines are compared, with three of them using Riemannian Geometry as either feature extraction or classification algorithms. The goal of this study is to assess the viability of Riemannian Geometry-based methods in non-optimal environments with sudden background noise changes, rather than maximizing classification accuracy values. For fifteen subjects, the average single-trial accuracy obtained for each pipeline was: 56.06% for Linear Discriminant Analysis (LDA), 72.13% for Bayesian Linear Discriminant Analysis (BLDA), 63.56% for Riemannian Minimum Distance to Mean (MDM), 69.22% for Riemannian Tangent Space with Logistic Regression (TS-LogR), and 63.30% for Riemannian Tangent Space with Support Vector Machine (TS-SVM). The results are higher for the pipelines based on BLDA and TS-LogR, suggesting that they could be viable methods for the detection of the P300 component when maximizing the bit rate is needed. For multiple-trial classification, the BLDA pipeline converged faster towards higher average values, closely followed by the TS-LogR pipeline. The two remaining Riemannian methods’ accuracy also increases with the number of trials, but towards a lower value compared to the aforementioned ones. Single-stimulus detection metrics revealed that the TS-LogR pipeline can be a viable classification method, as its results are only slightly lower than those obtained with BLDA. P300 waveforms were also analyzed to check for evidence of the component being elicited. Finally, a questionnaire was used to retrieve the most intuitive focusing methods employed by the subjects.

1 January 2006
Verified
Conference Paper
Closed access
EVElizabeth R Villota
Elizabeth R Villota
MKMurray Kerr
Murray Kerr
SJSuhada Jayasuriya
Suhada Jayasuriya
This paper considers configurations for anti-windup (AW) control of uncertain systems. Using the Bezout identity and coprime factorizations of the unconstrained controller and the plant, the configurations currently employed for static and dynamic AW control of uncertain systems are related to the general static AW control framework of Kothare et al (1994), and its extension via a Q parameter for dynamic AW controllers. The difference (mismatch) system describing the effect of saturation on the system response is explicitly described using the coprime relations and the Q parameter. This unification of configurations offers insight into the difficulties faced when employing specific AW control configurations and facilitates improved transparency in AW control system design

1 February 2011 in International Journal of Control
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Journal Article
Closed access
MKMurray Kerr
Murray Kerr
MTMatthew C. Turner
Matthew C. Turner
EVElizabeth R Villota
Elizabeth R Villota
SJSuhada Jayasuriya
Suhada Jayasuriya
IPIan Postlethwaite
Ian Postlethwaite
A model-based anti-windup (AW) controller design approach for constrained uncertain linear single-input–single-output (SISO) systems is proposed based on quantitative feedback theory (QFT) loopshaping. The design approach explicitly incorporates uncertainty, is suitable for the solution of both the magnitude and rate saturation problems, and provides for the design of low-order AW controllers satisfying robust stability and robust performance objectives. Robust stability is enforced using absolute stability theory and generic multipliers (i.e. circle, Popov, Zames–Falb), and robust performance is enforced using linear lower-bounds on the input–output maps capturing the effects of saturation as a metric. Two detailed design examples are presented. These show that even for simple systems, certain popular AW techniques lead to compensators that may fail to ensure robust stability and performance when saturation is encountered, but that the proposed QFT design approach is able to handle both saturation and uncertainty effectively.

1 March 2012
Verified
Conference Paper
Closed access
Renato MiyagusukuRenato Miyagusuku
Renato Miyagusuku
KAKlebes R. Arias
Klebes R. Arias
EVElizabeth R Villota
Elizabeth R Villota
In a one-unit (1U) CubeSat satellite, the attitude determination and control system restricts its allocated mass to be in the range of 150-200 g, and to operate with at most 1 W. Under such tight constraints, effective attitude control system design becomes quite challenging, especially for institutions that have no prior experience in space projects. Novice institutions usually start by designing passive control systems as they are more reliable. They only venture to test active control after attitude determination, satellite's communications, central control and power systems have been tested. Notably, at Universidad Nacional de Ingenieria, within the development of its first CubeSat satellite project Chasqui I, a hybrid magnetic attitude control system has been devised so that active control can be tested with high reliability.

5 June 2015 in Systems and Synthetic Biology
Verified
Journal Article
Open access
PDF file
CCChristian E. Cuba
Christian E. Cuba
AVAlexander R. Valle
Alexander R. Valle
GAGiancarlo Ayala-Charca
Giancarlo Ayala-Charca
EVElizabeth R Villota
Elizabeth R Villota
ACAlberto M. Coronado
Alberto M. Coronado
Biomolecular networks that present oscillatory behavior are ubiquitous in nature. While some design principles for robust oscillations have been identified, it is not well understood how these oscillations are affected when the kinetic parameters are constantly changing or are not precisely known, as often occurs in cellular environments. Many models of diverse complexity level, for systems such as circadian rhythms, cell cycle or the p53 network, have been proposed. Here we assess the influence of hundreds of different parameter sets on the sensitivities of two configurations of a well-known oscillatory system, the p53 core network. We show that, for both models and all parameter sets, the parameter related to the p53 positive feedback, i.e. self-promotion, is the only one that presents sizeable sensitivities on extrema, periods and delay. Moreover, varying the parameter set values to change the dynamical characteristics of the response is more restricted in the simple model, whereas the complex model shows greater tunability. These results highlight the importance of the presence of specific network patterns, in addition to the role of parameter values, when we want to characterize oscillatory biochemical systems.