Dimas Pereira-Obaya

Dr. Dimas Pereira-Obaya

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Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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22 September 2021 in Agronomy
Verified
Journal Article
Open access
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José Ramón Rodríguez-PérezJosé Ramón Rodríguez-Pérez
José Ramón Rodríguez-Pérez
VMVictor Marcelo
Victor Marcelo
DPDimas Pereira-Obaya
Dimas Pereira-Obaya
MFMarta García Fernández
Marta García Fernández
ESEnoc Sanz-Ablanedo
Enoc Sanz-Ablanedo
Visible, near, and shortwave infrared (VIS-NIR-SWIR) reflectance spectroscopy, a cost-effective and rapid means of characterizing soils, was used to predict soil sample properties for four vineyards (central and north-western Spain). Sieved and air-dried samples were measured using a portable spectroradiometer (350–2500 nm) and compared for pistol grip (PG) versus contact probe (CP) setups. Raw data processed using standard normal variate (SVN) and detrending transformation (DT) were grouped into four subsets (VIS: 350–700 nm; NIR: 701–1000 nm; SWIR: 1001–2500 nm; and full range: 350–2500 nm) in order to identify the most suitable range for determining soil characteristics. The performance of partial least squares regression (PLSR) models in predicting soil properties from reflectance spectra was evaluated by cross-validation. The four spectral subsets and transformed reflectances for each setup were used as PLSR predictor variables. The best performing PLSR models were obtained for pH, electrical conductivity, and phosphorous (R2 values above 0.92), while models for sand, nitrogen, and potassium showed moderately good performances (R2 values between 0.69 and 0.77). The SWIR subset and SVN + DT processing yielded the best PLSR models for both the PG and CP setups. VIS-NIR-SWIR reflectance spectroscopy shows promise as a technique for characterizing vineyard soils for precision viticulture purposes. Further studies will be carried out to corroborate our findings.

8 December 2021 in Agronomy
Verified
Journal Article
Open access
PDF file
MFMarta García Fernández
Marta García Fernández
ESEnoc Sanz-Ablanedo
Enoc Sanz-Ablanedo
DPDimas Pereira-Obaya
Dimas Pereira-Obaya
José Ramón Rodríguez-PérezJosé Ramón Rodríguez-Pérez
José Ramón Rodríguez-Pérez
In viticulture, information about vine vigour is a key input for decision-making in connection with production targets. Pruning weight (PW), a quantitative variable used as indicator of vegetative vigour, is associated with the quantity and quality of the grapes. Interest has been growing in recent years around the use of unmanned aerial vehicles (UAVs) or drones fitted with remote sensing facilities for more efficient crop management and the production of higher quality wine. Current research has shown that grape production, leaf area index, biomass, and other viticulture variables can be estimated by UAV imagery analysis. Although SfM lowers costs, saves time, and reduces the amount and type of resources needed, a review of the literature revealed no studies on its use to determine vineyard pruning weight. The main objective of this study was to predict PW in vineyards from a 3D point cloud generated with RGB images captured by a standard drone and processed by SfM. In this work, vertical and oblique aerial images were taken in two vineyards of Godello and Mencía varieties during the 2019 and 2020 seasons using a conventional Phantom 4 Pro drone. Pruning weight was measured on sampling grids comprising 28 calibration cells for Godello and 59 total cells for Mencía (39 calibration cells and 20 independent validation). The volume of vegetation (V) was estimated from the generated 3D point cloud and PW was estimated by linear regression analysis taking V as predictor variable. When the results were leave-one-out cross-validated (LOOCV), the R2 was found to be 0.71 and the RMSE 224.5 (g) for the PW estimate in Mencía 2020, calculated for the 39 calibration cells on the grounds of oblique images. The regression analysis results for the 20 validation samples taken independently of the rest (R2 = 0.62; RMSE = 249.3 g) confirmed the viability of using the SfM as a fast, non-destructive, low-cost procedure for estimating pruning weight.

17 August 2024 in Current Forestry Reports
Verified
Journal Article
Open access
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Arnadi MurtiyosoArnadi Murtiyoso
Arnadi Murtiyoso
CCCarlos Cabo
Carlos Cabo
ASArunima Singh
Arunima Singh
DPDimas Pereira-Obaya
Dimas Pereira-Obaya
WCWout Cherlet
Wout Cherlet
MMMartin Mokros
Martin Mokros
Purpose of Review: In recent years, the use of 3D point clouds in silviculture and forest ecology has seen a large increase in interest. With the development of novel 3D capture technologies, such as laser scanning, an increasing number of algorithms have been developed in parallel to process 3D point cloud data into more tangible results for forestry applications. From this variety of available algorithms, it can be challenging for users to decide which to apply to fulfil their goals best. Here, we present an extensive overview of point cloud acquisition and processing tools as well as their outputs for precision forestry. We then provide a comprehensive database of 24 algorithms for processing forest point clouds obtained using close-range techniques, specifically ground-based platforms. Recent Findings: Of the 24 solutions identified, 20 are open-source, two are free software, and the remaining two are commercial products. The compiled database of solutions, along with the corresponding technical guides on installation and general use, is accessible on a web-based platform as part of the COST Action 3DForEcoTech. The database may serve the community as a single source of information to select a specific software/algorithm that works for their requirements. Summary: We conclude that the development of various algorithms for processing point clouds offers powerful tools that can considerably impact forest inventories in the future, although we note the necessity of creating a standardisation paradigm.

21 March 2024 in Agronomy
Verified
Journal Article
Open access
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Sergio VélezSergio Vélez
Sergio Vélez
EBEnrique Barajas
Enrique Barajas
JRJosé Antonio Rubio
José Antonio Rubio
DPDimas Pereira-Obaya
Dimas Pereira-Obaya
José Ramón Rodríguez-PérezJosé Ramón Rodríguez-Pérez
José Ramón Rodríguez-Pérez
This study explores spectroscopy in the 350 to 2500 nm range for detecting powdery mildew (Erysiphe necator) in grapevine leaves, crucial for precision agriculture and sustainable vineyard management. In a controlled experimental vineyard setting, the spectral reflectance on leaves with varying infestation levels was measured using a FieldSpec 4 spectroradiometer during July and September. A detailed assessment was conducted following the guidelines recommended by the European and Mediterranean Plant Protection Organization (EPPO) to quantify the level of infestation; categorising leaves into five distinct grades based on the percentage of leaf surface area affected. Subsequently, spectral data were collected using a contact probe with a tungsten halogen bulb connected to the spectroradiometer, taking three measurements across different areas of each leaf. Partial Least Squares Regression (PLSR) analysis yielded coefficients of determination R2 = 0.74 and 0.71, and Root Mean Square Errors (RMSEs) of 12.1% and 12.9% for calibration and validation datasets, indicating high accuracy for early disease detection. Significant spectral differences were noted between healthy and infected leaves, especially around 450 nm and 700 nm for visible light, and 1050 nm, 1425 nm, 1650 nm, and 2250 nm for the near-infrared spectrum, likely due to tissue damage, chlorophyll degradation and water loss. Finally, the Powdery Mildew Vegetation Index (PMVI) was introduced, calculated as PMVI = (R755 − R675)/(R755 + R675), where R755 and R675 are the reflectances at 755 nm (NIR) and 675 nm (red), effectively estimating disease severity (R2 = 0.7). The study demonstrates that spectroscopy, combined with PMVI, provides a reliable, non-invasive method for managing powdery mildew and promoting healthier vineyards through precision agriculture practices.

7 March 2024 in Sensors
Verified
Journal Article
Open access
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DPDimas Pereira-Obaya
Dimas Pereira-Obaya
CCCarlos Cabo
Carlos Cabo
Celestino OrdóñezCelestino Ordóñez
Celestino Ordóñez
José Ramón Rodríguez-PérezJosé Ramón Rodríguez-Pérez
José Ramón Rodríguez-Pérez
Chestnut and chestnut byproducts are of worldwide interest, so there is a constant need to develop faster and more accurate monitoring techniques. Recent advances in simultaneous localization and mapping (SLAM) algorithms and user accessibility have led to increased use of handheld mobile laser scanning (HHLS) in precision agriculture. We propose a tree growth monitoring methodology, based on HHLS point cloud processing, that calculates the length of branches through spatial discretization of the point cloud for each tree. The methodology was tested by comparing two point clouds collected almost simultaneously for each of a set of sweet chestnut trees. The results obtained indicated that our HHLS method was reliable and accurate in efficiently monitoring sweet chestnut tree growth. The same methodology was used to calculate the growth of the same set of trees over 37 weeks (from spring to winter). Differences in week 0 and week 37 scans showed an approximate mean growth of 0.22 m, with a standard deviation of around 0.16 m reflecting heterogeneous tree growth.

20 March 2023 in Agronomy
Verified
Journal Article
Open access
PDF file
DPDimas Pereira-Obaya
Dimas Pereira-Obaya
Fernando Castedo DoradoFernando Castedo Dorado
Fernando Castedo Dorado
ESEnoc Sanz-Ablanedo
Enoc Sanz-Ablanedo
KCKaren Brigitte Mejía Correal
Karen Brigitte Mejía Correal
José Ramón Rodríguez-PérezJosé Ramón Rodríguez-Pérez
José Ramón Rodríguez-Pérez
While populations of the Asian chestnut gall wasp (Dryocosmus kuriphilus Yasumatsu), an invasive pest affecting the European chestnut (Castanea sativa Miller), have started to be controlled biologically, this pest still conditions chestnut tree development. With the aim of assessing plant health status as a means of monitoring gall wasp infestation, we used a field spectroradiometer to collect data from leaves taken from 83 trees in two chestnut orchards. We calculated characteristic spectral signatures for pest infestation, and after training and validation, developed classifiers to distinguish between different infestation levels. Several partial least square discriminant analysis (PLS-DA) and random forest (RF) models were fitted with reflectance and transformed values to obtain characteristic curves reflecting infestation. Four wavelengths (560 nm, 680 nm, 1400 nm, and 1935 nm) were identified as showing the greatest differences between curves. The best overall accuracy (69.23%) was achieved by an RF model fitted with reflectance transformed values. Lower overall accuracy (26.92%) was achieved in distinguishing between infestation levels. In conclusion, while more specific differences in infestation levels were not detectable, our method successfully discriminated between gall absence and presence.