Lake surfaces are warming worldwide, raising concerns about lake organism responses to thermal habitat changes. Species may cope with temperature increases by shifting their seasonality or their depth to track suitable thermal habitats, but these responses may be constrained by ecological interactions, life histories or limiting resources. Here we use 32 million temperature measurements from 139 lakes to quantify thermal habitat change (percentage of non-overlap) and assess how this change is exacerbated by potential habitat constraints. Long-term temperature change resulted in an average 6.2% non-overlap between thermal habitats in baseline (1978–1995) and recent (1996–2013) time periods, with non-overlap increasing to 19.4% on average when habitats were restricted by season and depth. Tropical lakes exhibited substantially higher thermal non-overlap compared with lakes at other latitudes. Lakes with high thermal habitat change coincided with those having numerous endemic species, suggesting that conservation actions should consider thermal habitat change to preserve lake biodiversity.

Globally, lake surface water temperatures have warmed rapidly relative to air temperatures, but changes in deepwater temperatures and vertical thermal structure are still largely unknown. We have compiled the most comprehensive data set to date of long-term (1970–2009) summertime vertical temperature profiles in lakes across the world to examine trends and drivers of whole-lake vertical thermal structure. We found significant increases in surface water temperatures across lakes at an average rate of + 0.37 °C decade⁻¹, comparable to changes reported previously for other lakes, and similarly consistent trends of increasing water column stability (+ 0.08 kg m⁻³decade⁻¹). In contrast, however, deepwater temperature trends showed little change on average (+ 0.06 °C decade⁻¹), but had high variability across lakes, with trends in individual lakes ranging from − 0.68 °C decade⁻¹to + 0.65 °C decade⁻¹. The variability in deepwater temperature trends was not explained by trends in either surface water temperatures or thermal stability within lakes, and only 8.4% was explained by lake thermal region or local lake characteristics in a random forest analysis. These findings suggest that external drivers beyond our tested lake characteristics are important in explaining long-term trends in thermal structure, such as local to regional climate patterns or additional external anthropogenic influences.

Lake surface water temperatures are warming worldwide, raising concerns about the future integrity of valuable lake ecosystem services. In contrast to surface water temperatures, we know far less about what is happening to water temperature beneath the surface, where most organisms live. Moreover, we know little about which characteristics make lakes more or less sensitive to climate change and other environmental stressors. We examined changes in lake thermal structure for 231 lakes across northeastern North America (NENA), a region with an exceptionally high density of lakes. We determined how lake thermal structure has changed in recent decades (1975–2012) and assessed which lake characteristics are related to changes in lake thermal structure. In general, NENA lakes had increasing near-surface temperatures and thermal stratification strength. On average, changes in deepwater temperatures for the 231 lakes were not significantly different than zero, but individually, half of the lakes experienced warming and half cooling deepwater temperature through time. More transparent lakes (Secchi transparency >5 m) tended to have higher near-surface warming and greater increases in strength of thermal stratification than less transparent lakes. Whole-lake warming was greatest in polymictic lakes, where frequent summer mixing distributed heat throughout the water column. Lakes often function as important sentinels of climate change, but lake characteristics within and across regions modify the magnitude of the signal with important implications for lake biology, ecology and chemistry.

Surface water temperatures are warming in many lakes across the globe, and this is widely attributed to warming air temperatures. Yet two lakes in Pennsylvania (USA) have shown long‐term increases in surface water temperatures over the past 27 summers during a period with no significant increase in regional air temperature. We examined the relationship between long‐term trends in seven metrics of whole‐lake thermal structure in two lakes and several potential driver variables. Driver variables included water transparency, lake pH, and meteorological variables. Both lakes exhibited significant surface warming and hypolimnetic cooling, resulting in stronger thermal stratification that further reduced mixing and heat transfer to deep waters. During this time period, there were no long‐term trends in solar radiation or in thawing degree days, but annual precipitation and lake pH increased. Water transparency greatly decreased due to increased dissolved organic matter quantity and color, most likely due to increased precipitation and recovery from anthropogenic acidification. In both lakes, the changes in lake thermal structure and heat distribution were strongly related to the decreases in water transparency and increases in dissolved organic matter. This transparency‐mediated mechanism may augment the effects of air temperature‐driven lake warming in other regions where decreasing transparency is also prevalent, further enhancing increases in surface water temperature and thermal stratification. These results have important ecological and biogeochemical implications, highlighting the need for investigations of multiple drivers to fully understand how lakes will respond to future climate change.