José Rafael de Almeida

Dr. José Rafael de Almeida

Universidad Regional Amazónica IKIAM, Archidona, Ecuador
orcid

Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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8 March 2022 in Pharmaceuticals
Verified
Journal Article
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Alberto RoblesAlberto Robles
Alberto Robles
EPEdgar A. Pinos-Tamayo
Edgar A. Pinos-Tamayo
Bruno M. P. M. OliveiraBruno M. P. M. Oliveira
Bruno M. P. M. Oliveira
JOJosselyn Aracely Ortega
Josselyn Aracely Ortega
Carolina Proaño-BolañosCarolina Proaño-Bolaños
Carolina Proaño-Bolaños
José Rafael de AlmeidaJosé Rafael de Almeida
José Rafael de Almeida
Peptides have positively impacted the pharmaceutical industry as drugs, biomarkers, or diagnostic tools of high therapeutic value. However, only a handful have progressed to the market. Toxicity is one of the main obstacles to translating peptides into clinics. Hemolysis or hemotoxicity, the principal source of toxicity, is a natural or disease-induced event leading to the death of vital red blood cells. Initial screenings for toxicity have been widely evaluated using erythrocytes as the gold standard. More recently, many online databases filled with peptide sequences and their biological meta-data have paved the way toward hemolysis prediction using user-friendly, fast-access machine learning-driven programs. This review details the growing contributions of in silico approaches developed in the last decade for the large-scale prediction of erythrocyte lysis induced by peptides. After an overview of the pharmaceutical landscape of peptide therapeutics, we highlighted the relevance of early hemolysis studies in drug development. We emphasized the computational models and algorithms used to this end in light of historical and recent findings in this promising field. We benchmarked seven predictors using peptides from different data sets, having 7–35 amino acids in length. According to our predictions, the models have scored an accuracy over 50.42% and a minimal Matthew’s correlation coefficient over 0.11. The maximum values for these statistical parameters achieved 100.0% and 1.00, respectively. Finally, strategies for optimizing peptide selectivity were described, as well as prospects for future investigations. The development of in silico predictive approaches to peptide toxicity has just started, but their important contributions clearly demonstrate their potential for peptide science and computer-aided drug design. Methodology refinement and increasing use will motivate the timely and accurate in silico identification of selective, non-toxic peptide therapeutics.

25 October 2017 in Current Medicinal Chemistry
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Journal Article
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José Rafael de AlmeidaJosé Rafael de Almeida
José Rafael de Almeida
LRL.M. Resende
L.M. Resende
RWR.K. Watanabe
R.K. Watanabe
VCVictor Carregari
Victor Carregari
SHSalomón Huancahuire-Vega
Salomón Huancahuire-Vega
SSSaulo Silva
Saulo Silva
Snake venoms are natural sources of biologically active molecules that are able to act selectively and specifically on different cellular targets, modulating physiological functions. Thus, these mixtures, composed mainly of proteins and peptides, provide ample and challenging opportunities and a diversified molecular architecture to design and develop tools and agents of scientific and therapeutic interest. Among these components, peptides and small proteins play diverse roles in numerous physiological processes, exerting a wide range of pharmacological activities, such as antimicrobial, antihypertensive, analgesic, antitumor, analgesic, among others. The pharmaceutical and cosmetic industries have recognized the huge potential of these privileged frameworks and believe them to be a promising alternative to contemporary drugs. A number of natural or synthetic peptides from snake venoms have already found preclinical or clinical applications for the treatment of pain, hypertension, cardiovascular diseases and aging skin. A well-known example is captopril, whose natural peptide precursor was isolated from Bothrops jararaca snake venom, which is a peptide-based drug that inhibits the angiotensin-converting enzyme, producing an anti-hypertensive effect. The present review looks at the main peptides (natriuretic peptides, bradykinin-potentiating peptides and sarafotoxins) and low mass proteins (crotamine, disintegrins and three-Finger toxins) from snake venoms, as well as synthetic peptides inspired by them, describing their biochemical, structural and physiological features, as well as their applications as research tools and therapeutic agents.

22 September 2013 in BioMed Research International
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BCBruna Mara Aparecida De Carvalho
Bruna Mara Aparecida De Carvalho
JSJ. D. L. Santos
J. D. L. Santos
BXB. M. Xavier
B. M. Xavier
José Rafael de AlmeidaJosé Rafael de Almeida
José Rafael de Almeida
LRL. M. Resende
L. M. Resende
DMDaniela Priscila Marchi-Salvador
Daniela Priscila Marchi-Salvador
Ophidian envenomation is an important health problem in Brazil and other South American countries. In folk medicine, especially in developing countries, several vegetal species are employed for the treatment of snakebites in communities that lack prompt access to serum therapy. However, the identification and characterization of the effects of several new plants or their isolated compounds, which are able to inhibit the activities of snake venom, are extremely important and such studies are imperative. Snake venom contains several organic and inorganic compounds; phospholipases A2(PLA2s) are one of the principal toxic components of venom. PLA2s display a wide variety of pharmacological activities, such as neurotoxicity, myotoxicity, cardiotoxicity, anticoagulant, hemorrhagic, and edema-inducing effects. PLA2inhibition is of pharmacological and therapeutic interests as these enzymes are involved in several inflammatory diseases. This review describes the results of several studies of plant extracts and their isolated active principles, when used against crude snake venoms or their toxic fractions. Isolated inhibitors, such as steroids, terpenoids, and phenolic compounds, are able to inhibit PLA2s from different snake venoms. The design of specific inhibitors of PLA2s might help in the development of new pharmaceutical drugs, more specific antivenom, or even as alternative approaches for treating snakebites.

26 September 2018 in Drug Development Research
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José Rafael de AlmeidaJosé Rafael de Almeida
José Rafael de Almeida
APAntonio L. V. Palacios
Antonio L. V. Palacios
RPRicardo Palma
Ricardo Palma
BMBruno Mendes
Bruno Mendes
CTCátia Teixeira
Cátia Teixeira
SSSaulo Silva
Saulo Silva

29 August 2018 in Journal of Analytical Methods in Chemistry
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Journal Article
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NMNoroska Gabriela Mogollón
Noroska Gabriela Mogollón
CQCristian Daniel Quiroz-Moreno
Cristian Daniel Quiroz-Moreno
PPPaloma Santana Prata
Paloma Santana Prata
José Rafael de AlmeidaJosé Rafael de Almeida
José Rafael de Almeida
ACAmanda Sofía Cevallos
Amanda Sofía Cevallos
FAFabio Augusto
Fabio Augusto
This article reviews mass spectrometry methods in forensic toxicology for the identification and quantification of drugs of abuse in biological fluids, tissues, and synthetic samples, focusing on the methodologies most commonly used; it also discusses new methodologies in screening and target forensic analyses, as well as the evolution of instrumentation in mass spectrometry.