Shokofeh Anari

Dr. Shokofeh Anari

orcid

Research Focus & Metrics

Academic Career Length

5Years (2022-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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25 August 2022 in Mathematical Problems in Engineering
Verified
Journal Article
Open access
PDF file
SAShokofeh Anari
Shokofeh Anari
NSNazanin Tataei Sarshar
Nazanin Tataei Sarshar
NMNegin Mahjoori
Negin Mahjoori
SDShadi Dorosti
Shadi Dorosti
ARAmirali Rezaie
Amirali Rezaie
Thyroid nodule is one of the common life-threatening diseases, and it had an increasing trend over the last years. Ultrasound imaging is a commonly used diagnostic method for detecting and characterizing thyroid nodules. However, assessing the entire slide images is time-consuming and challenging for the experts. For assessing ultrasound images in a meaningful manner, there is a need for automated, trustworthy, and objective approaches. The recent advancements in deep learning have revolutionized many aspects of computer-aided diagnosis (CAD) and image analysis tools that address the problem of diagnosing thyroid nodules. In this study, we explained the objectives of deep learning in thyroid cancer imaging and conducted a literature review on its potential, limits, and current application in this area. We gave an overview of recent progress in thyroid cancer diagnosis using deep learning methods and discussed various challenges and practical problems that might limit the growth of deep learning and its integration into clinical workflow.

6 January 2025 in Scientific Reports
Verified
Journal Article
Open access
PDF file
SAShokofeh Anari
Shokofeh Anari
SSSoroush Sadeghi
Soroush Sadeghi
GSGhazaal Sheikhi
Ghazaal Sheikhi
RRRamin Ranjbarzadeh
Ramin Ranjbarzadeh
MBMalika Bendechache
Malika Bendechache
This study utilizes the Breast Ultrasound Image (BUSI) dataset to present a deep learning technique for breast tumor segmentation based on a modified UNet architecture. To improve segmentation accuracy, the model integrates attention mechanisms, such as the Convolutional Block Attention Module (CBAM) and Non-Local Attention, with advanced encoder architectures, including ResNet, DenseNet, and EfficientNet. These attention mechanisms enable the model to focus more effectively on relevant tumor areas, resulting in significant performance improvements. Models incorporating attention mechanisms outperformed those without, as reflected in superior evaluation metrics. The effects of Dice Loss and Binary Cross-Entropy (BCE) Loss on the model’s performance were also analyzed. Dice Loss maximized the overlap between predicted and actual segmentation masks, leading to more precise boundary delineation, while BCE Loss achieved higher recall, improving the detection of tumor areas. Grad-CAM visualizations further demonstrated that attention-based models enhanced interpretability by accurately highlighting tumor areas. The findings denote that combining advanced encoder architectures, attention mechanisms, and the UNet framework can yield more reliable and accurate breast tumor segmentation. Future research will explore the use of multi-modal imaging, real-time deployment for clinical applications, and more advanced attention mechanisms to further improve segmentation performance.

28 February 2022 in Complex & Intelligent Systems
Verified
Journal Article
Open access
PDF file
RRRamin Ranjbarzadeh
Ramin Ranjbarzadeh
SDShadi Dorosti
Shadi Dorosti
Saeid Jafarzadeh GhoushchiSaeid Jafarzadeh Ghoushchi
Saeid Jafarzadeh Ghoushchi
sadaf safavisadaf safavi
sadaf safavi
NRNavid Razmjooy
Navid Razmjooy
Malika BendechacheMalika Bendechache
Malika Bendechache
The increased intracranial pressure (ICP) can be described as an increase in pressure around the brain and can lead to serious health problems. The assessment of ultrasound images is commonly conducted by skilled experts which is a time-consuming approach, but advanced computer-aided diagnosis (CAD) systems can assist the physician to decrease the time of ICP diagnosis. The accurate detection of the nerve optic regions, with drawing a precise slope line behind the eyeball and calculating the diameter of nerve optic, are the main aims of this research. First, the Fuzzy C-mean (FCM) clustering is employed for segmenting the input CT screening images into the different parts. Second, a histogram equalization approach is used for region-based image quality enhancement. Then, the Local Directional Number method (LDN) is used for representing some key information in a new image. Finally, a cascade Convolutional Neural Network (CNN) is employed for nerve optic segmentation by two distinct input images. Comprehensive experiments on the CT screening dataset [The Cancer Imaging Archive (TCIA)] consisting of 1600 images show the competitive results of inaccurate extraction of the brain features. Also, the indexes such as Dice, Specificity, and Precision for the proposed approach are reported 87.7%, 91.3%, and 90.1%, respectively. The final classification results show that the proposed approach effectively and accurately detects the nerve optic and its diameter in comparison with the other methods. Therefore, this method can be used for early diagnose of ICP and preventing the occurrence of serious health problems in patients.


14 November 2022 in Cognitive Computation
Verified
Journal Article
Closed access
PDF file
RRRamin Ranjbarzadeh
Ramin Ranjbarzadeh
Saeid Jafarzadeh GhoushchiSaeid Jafarzadeh Ghoushchi
Saeid Jafarzadeh Ghoushchi
SAShokofeh Anari
Shokofeh Anari
sadaf safavisadaf safavi
sadaf safavi
NSNazanin Tataei Sarshar
Nazanin Tataei Sarshar
Malika BendechacheMalika Bendechache
Malika Bendechache

21 September 2024 in Bioengineering
Verified
Journal Article
Open access
PDF file
SAShokofeh Anari
Shokofeh Anari
Gabriel Gomes de OliveiraGabriel Gomes de Oliveira
Gabriel Gomes de Oliveira
RRRamin Ranjbarzadeh
Ramin Ranjbarzadeh
AAAngela Maria Alves
Angela Maria Alves
GVGabriel Caumo Vaz
Gabriel Caumo Vaz
Malika BendechacheMalika Bendechache
Malika Bendechache
This study introduces a sophisticated neural network structure for segmenting breast tumors. It achieves this by combining a pretrained Vision Transformer (ViT) model with a UNet framework. The UNet architecture, commonly employed for biomedical image segmentation, is further enhanced with depthwise separable convolutional blocks to decrease computational complexity and parameter count, resulting in better efficiency and less overfitting. The ViT, renowned for its robust feature extraction capabilities utilizing self-attention processes, efficiently captures the overall context within images, surpassing the performance of conventional convolutional networks. By using a pretrained ViT as the encoder in our UNet model, we take advantage of its extensive feature representations acquired from extensive datasets, resulting in a major enhancement in the model’s ability to generalize and train efficiently. The suggested model has exceptional performance in segmenting breast cancers from medical images, highlighting the advantages of integrating transformer-based encoders with efficient UNet topologies. This hybrid methodology emphasizes the capabilities of transformers in the field of medical image processing and establishes a new standard for accuracy and efficiency in activities related to tumor segmentation.