Pavel Zelenikhin

Dr. Pavel Zelenikhin

Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan 420008, Russia
orcid

Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 May 2018 in PLOS ONE
Verified
Journal Article
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MBMikhail Bogachev
Mikhail Bogachev
VVVladimir Yurievich Volkov
Vladimir Yurievich Volkov
Oleg MarkelovOleg Markelov
Oleg Markelov
ETElena Trizna
Elena Trizna
DBDiana R Baydamshina
Diana R Baydamshina
AKAirat Kayumov
Airat Kayumov
Fluorescent staining is a common tool for both quantitative and qualitative assessment of pro- and eukaryotic cells sub-population fractions by using microscopy and flow cytometry. However, direct cell counting by flow cytometry is often limited, for example when working with cells rigidly adhered either to each other or to external surfaces like bacterial biofilms or adherent cell lines and tissue samples. An alternative approach is provided by using fluorescent microscopy and confocal laser scanning microscopy (CLSM), which enables the evaluation of fractions of cells subpopulations in a given sample. For the quantitative assessment of cell fractions in microphotographs, we suggest a simple two-step algorithm that combines single cells selection and the statistical analysis. To facilitate the first step, we suggest a simple procedure that supports finding the balance between the detection threshold and the typical size of single cells based on objective cell size distribution analysis. Based on a series of experimental measurements performed on bacterial and eukaryotic cells under various conditions, we show explicitly that the suggested approach effectively accounts for the fractions of different cell sub-populations (like the live/dead staining in our samples) in all studied cases that are in good agreement with manual cell counting on microphotographs and flow cytometry data. This algorithm is implemented as a simple software tool that includes an intuitive and user-friendly graphical interface for the initial adjustment of algorithm parameters to the microphotographs analysis as well as for the sequential analysis of homogeneous series of similar microscopic images without further user intervention. The software tool entitled BioFilmAnalyzer is freely available online at https://bitbucket.org/rogex/biofilmanalyzer/downloads/.

21 November 2018 in Discover Nano
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VSVadim Vladimir Semashko
Vadim Vladimir Semashko
MPMaksim S Pudovkin
Maksim S Pudovkin
ACAlkiviadis-Constantinos Cefalas
Alkiviadis-Constantinos Cefalas
Pavel ZelenikhinPavel Zelenikhin
Pavel Zelenikhin
VGVassilios Gavriil
Vassilios Gavriil
Evangelia SarantopoulouEvangelia Sarantopoulou
Evangelia Sarantopoulou
Localised extracellular interactions between nanoparticles and transmembrane signal receptors may well activate cancer cell growth. Herein, tiny LaF3 and PrF3 nanoparticles in DMEM+FBS suspensions stimulated tumour cell growth in three different human cell lines (A549, SW837 and MCF7). Size distribution of nanoparticles, activation of AKT and ERK signalling pathways and viability tests pointed to mechanical stimulation of ligand adhesion binding sites of integrins and EGFR via a synergistic action of an ensemble of tiny size nanoparticles (< 10 nm). While tiny size nanoparticles may be well associated with the activation of EGFR, integrin interplay with nanoparticles remains a multifaceted issue. A theoretical motif shows that, within the requisite pN force scale, each ligand adhesion binding site can be activated by a tiny size dielectric nanoparticle via electrical dipole interaction. The size of the active nanoparticle stayed specified by the amount of the surface charges on the ligand adhesion binding site and the nanoparticle, and also by the separating distance between them. The polar component of the electrical dipole force remained inversely proportional to the second power of nanoparticle’s size, evincing that only tiny size dielectric nanoparticles might stimulate cancer cell growth via electrical dipole interactions. The work contributes towards recognising different cytoskeletal stressing modes of cancer cells.

16 June 2022 in Polymers
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LBLiliya R. Bogdanova Liliya R. Bogdanova
Liliya R. Bogdanova Liliya R. Bogdanova
Pavel ZelenikhinPavel Zelenikhin
Pavel Zelenikhin
AMAnastasiya O. Makarova
Anastasiya O. Makarova
Olga S. ZuevaOlga S. Zueva
Olga S. Zueva
VSVadim V. Vladimirovich Salnikov
Vadim V. Vladimirovich Salnikov
OIOlga N. Ilinskaya
Olga N. Ilinskaya
To deliver therapeutic proteins into a living body, it is important to maintain their target activity in the gastrointestinal tract after oral administration. Secreted ribonuclease from Bacillus pumilus (binase) has antitumor and antiviral activity, which makes it a promising therapeutic agent. This globular protein of small molecular weight (12.2 kDa) is considered as a potential agent that induces apoptosis of tumor cells expressing certain oncogenes, including colorectal and duodenum cancer. The most important problem of its usage is the preservation of its structure and target activity, which could be lost during oral administration. Here, we developed alginate microspheres reinforced with divalent cations and analyzed the enzyme release from them. Using methods of scanning electron microscopy, measurements of fluorescence, enzyme catalytic activity, and determination of viability of the duodenum adenocarcinoma tumor cell line, we characterized obtained microspheres and chose calcium as a biogenic ion-strengthening microsphere structure. Among such modified additivities as beta-casein, gelatin, and carbon nanotubes introduced into microspheres, only gelatin showed a pronounced increase in their stability and provided data on the prolonged action of enzyme release from microspheres into tumor cell culture medium during 48 h in an amount of about 70% of the loaded quantity.

3 May 2019 in Frontiers in Pharmacology
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Open access
VKVera Khojaewa
Vera Khojaewa
OLOleg Lopatin
Oleg Lopatin
Pavel ZelenikhinPavel Zelenikhin
Pavel Zelenikhin
OIOlga Ilinskaya
Olga Ilinskaya
Natural and synthetic zeolites have many applications in biomedicine and nutrition. Due to its properties, zeolites can absorb therapeutically active proteins and release them under physiological conditions. In this study we tested the clinoptilolite, chabazite and natrolite ability to be loaded by antitumor ribonuclease binase and the cytotoxicity of the complexes obtained. We found the optimal conditions for binase loading into zeolites and established the dynamic of its release. Cytotoxic effects of zeolite-binase complexes towards colorectal cancer CaCo2 cells were characterized after 24h and 48h of incubation with cells using MTT-test. Zeolites were toxic itself and reduced cells viability by 30% (clinoptilolite ), 40% (chabazite) and 70% (natrolite) after 48 h of incubation but complexes of clinoptilolite as well as chabazite with binase demonstrated always enhanced toxicity (up to 57% and 60% for clinoptilolite and chabazite, respectively) in comparison to binase and zeolites separately. Our results contribute to the perspective development of binase-based complexes for therapy of colorectal cancer for or the treatment of malignant skin neoplasms when a complexes can be used in pasty form.

5 March 2020 in Beilstein Journal of Nanotechnology
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Dmitriy ShurpikDmitriy Shurpik
Dmitriy Shurpik
DSDenis A Sevastyanov
Denis A Sevastyanov
Pavel ZelenikhinPavel Zelenikhin
Pavel Zelenikhin
Pavel PadnyaPavel Padnya
Pavel Padnya
VEVladimir G. Evtugyn
Vladimir G. Evtugyn
Ivan StoikovIvan Stoikov
Ivan Stoikov
For the first time, stable pillar[5]arene/Ag+ nanoparticles, consisting of water-soluble pillar[5]arene containing γ-sulfobetaine fragments and Ag+ ions without Ag–Ag bonds, were synthesized and characterized. The pillar[5]arene/Ag+ (ratio 1:10) nanoparticles obtained were cubic with a rib length of 100 nm and are less cytotoxic than Ag+ ions. The survival of the A549 model cells in the presence of pillar[5]arene/Ag+ (1:10) nanoparticles at a concentration of 30 and 40 μM was 76% and 55%, while in the absence of pillar[5]arene, the cell survival for free Ag+ ions at the same concentration was 30% and 10%, respectively. The results can be used to create new antibacterial materials and 2D biomedical coatings.

9 May 2022 in Nanomaterials
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Dmitriy ShurpikDmitriy Shurpik
Dmitriy Shurpik
YAYulia I. Aleksandrova
Yulia I. Aleksandrova
OMOlga Mostovaya
Olga Mostovaya
VNViktoriya A. Nazmutdinova
Viktoriya A. Nazmutdinova
RTRegina E. Tazieva
Regina E. Tazieva
Ivan StoikovIvan Stoikov
Ivan Stoikov
Polymer self-healing films containing fragments of pillar[5]arene were obtained for the first time using thiol/disulfide redox cross-linking. These films were characterized by thermogravimetric analysis and differential scanning calorimetry, FTIR spectroscopy, and electron microscopy. The films demonstrated the ability to self-heal through the action of atmospheric oxygen. Using UV–vis, 2D 1H-1H NOESY, and DOSY NMR spectroscopy, the pillar[5]arene was shown to form complexes with the antimicrobial drug moxifloxacin in a 2:1 composition (logK11 = 2.14 and logK12 = 6.20). Films containing moxifloxacin effectively reduced Staphylococcus aureus and Klebsiella pneumoniae biofilms formation on adhesive surfaces.