Sara Bonella

Dr. Sara Bonella

CECAM EPF-Lausanne, BCH 3102 (Batochime UNIL), Av. F.-A. Forel 2, CH-1015 Lausanne, Switzerland

Research Focus & Metrics

Academic Career Length

12Years (2015-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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13 December 2019 in Physical Chemistry Chemical Physics
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LSLaura Scalfi
Laura Scalfi
DLDavid Limmer
David Limmer
ACAlessandro Coretti
Alessandro Coretti
Sara BonellaSara Bonella
Sara Bonella
PMPaul A. Madden
Paul A. Madden
BRBenjamin Rotenberg
Benjamin Rotenberg
Statistical mechanics of constant-potential molecular simulations yields a new fluctuation–dissipation relation for the differential capacitance.

8 November 2022 in The Journal of Chemical Physics
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Journal Article
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ACAlessandro Coretti
Alessandro Coretti
CBCamille Bacon
Camille Bacon
RBRoxanne Berthin
Roxanne Berthin
ASAlessandra Serva
Alessandra Serva
LSLaura Scalfi
Laura Scalfi
MSMathieu Salanne
Mathieu Salanne
Electrochemistry is central to many applications, ranging from biology to energy science. Studies now involve a wide range of techniques, both experimental and theoretical. Modeling and simulations methods, such as density functional theory or molecular dynamics, provide key information on the structural and dynamic properties of the systems. Of particular importance are polarization effects of the electrode/electrolyte interface, which are difficult to simulate accurately. Here, we show how these electrostatic interactions are taken into account in the framework of the Ewald summation method. We discuss, in particular, the formal setup for calculations that enforce periodic boundary conditions in two directions, a geometry that more closely reflects the characteristics of typical electrolyte/electrode systems and presents some differences with respect to the more common case of periodic boundary conditions in three dimensions. These formal developments are implemented and tested in MetalWalls, a molecular dynamics software that captures the polarization of the electrolyte and allows the simulation of electrodes maintained at a constant potential. We also discuss the technical aspects involved in the calculation of two sets of coupled degrees of freedom, namely the induced dipoles and the electrode charges. We validate the implementation, first on simple systems, then on the well-known interface between graphite electrodes and a room-temperature ionic liquid. We finally illustrate the capabilities of MetalWalls by studying the adsorption of a complex functionalized electrolyte on a graphite electrode.

18 April 2024 in Digital Discovery
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MEMatthew L. Evans
Matthew L. Evans
JBJohan Bergsma
Johan Bergsma
AMAndrius Merkys
Andrius Merkys
CACasper W. Andersen
Casper W. Andersen
OAOskar B. Andersson
Oskar B. Andersson
RARickard Armiento
Rickard Armiento
The Open Databases Integration for Materials Design (OPTIMADE) application programming interface (API) empowers users with holistic access to a federation of databases, enhancing the accessibility and discoverability of materials and chemical data.

24 August 2021 in The Journal of Physical Chemistry Letters
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Journal Article
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NMNastasia Mauger
Nastasia Mauger
TPThomas Plé
Thomas Plé
LLLouis Lagardère
Louis Lagardère
Sara BonellaSara Bonella
Sara Bonella
ÉMÉtienne Mangaud
Étienne Mangaud
SHSimon Huppert
Simon Huppert

2 April 2019 in Journal of Chemical Theory and Computation
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Journal Article
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EMEtienne Mangaud
Etienne Mangaud
SHSimon Huppert
Simon Huppert
TPThomas Plé
Thomas Plé
PDPhilippe Depondt
Philippe Depondt
Sara BonellaSara Bonella
Sara Bonella
FFFabio Finocchi
Fabio Finocchi

10 September 2021 in The Journal of Chemical Physics
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Journal Article
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TPThomas Plé
Thomas Plé
SHSimon Huppert
Simon Huppert
FFFabio Finocchi
Fabio Finocchi
PDPhilippe Depondt
Philippe Depondt
Sara BonellaSara Bonella
Sara Bonella
The performance of different approximate algorithms for computing anharmonic features in vibrational spectra is analyzed and compared on model and more realistic systems that present relevant nuclear quantum effects. The methods considered combine approximate sampling of the quantum thermal distribution with classical time propagation and include Matsubara dynamics, path integral dynamics approaches, linearized initial value representation, and the recently introduced adaptive quantum thermal bath. A perturbative analysis of these different methods enables us to account for the observed numerical performance on prototypes for overtones and combination bands and to draw qualitatively correct trends for the numerical results obtained for Fermi resonances. Our results prove that the unequal performances of these approaches often derive from the method employed to sample initial conditions and not, as usually assumed, from the lack of coherence in the time propagation. Furthermore, as confirmed by the analysis reported in Benson and Althorpe, J. Chem. Phys. 155, 104107 (2021), we demonstrate, both via the perturbative approach and numerically, that path integral dynamics methods fail to reproduce the intensities of these anharmonic features and follow purely classical trends with respect to their temperature behavior. Finally, the remarkably accurate performance of the adaptive quantum thermal bath approach is documented and motivated.