Inherent brittleness, which easily leads to crack formation and propagation during use, is a serious problem for protective ceramic thin-film applications. Superlattice architectures, with alternating nm-thick layers of typically softer/stiffer materials, have been proven powerful method to improve the mechanical performance of, e.g., cubic transition metal nitride ceramics. Using high-throughput first-principles calculations, we propose that superlattice structures hold promise also for enhancing mechanical properties and fracture resistance of transition metal diborides with two competing hexagonal phases, $$\alpha$$ and $$\omega$$ . We study 264 possible combinations of $$\alpha /\alpha$$ , $$\alpha /\omega$$ or $$\omega /\omega$$ MB $$_2$$ (where M $$=$$ Al or group 3–6 transition metal) diboride superlattices. Based on energetic stability considerations, together with restrictions for lattice and shear modulus mismatch ( $$\Delta a<4\%$$ , $$\Delta G>40$$ GPa), we select 33 superlattice systems for further investigations. The identified systems are analysed in terms of mechanical stability and elastic constants, $$C_{ij}$$ , where the latter provide indication of in-plane vs. out-of-plane strength ( $$C_{11}$$ , $$C_{33}$$ ) and ductility ( $$C_{13}-C_{44}$$ , $$C_{12}-C_{66}$$ ). The superlattice ability to resist brittle cleavage along interfaces is estimated by Griffith’s formula for fracture toughness. The $$\alpha /\alpha$$ -type TiB $$_2$$ /MB $$_2$$ (M $$=$$ Mo, W), HfB $$_2$$ /WB $$_2$$ , VB $$_2$$ /MB $$_2$$ (M $$=$$ Cr, Mo), NbB $$_2$$ /MB $$_2$$ (M $$=$$ Mo, W), and $$\alpha /\omega$$ -type AlB $$_2$$ /MB $$_2$$ (M $$=$$ Nb, Ta, Mo, W), are suggested as the most promising candidates providing atomic-scale basis for enhanced toughness and resistance to crack growth.