Yuk Sham

Dr. Yuk Sham

Department of Integrative Biology and Physiology, University of Minnesota Medical School, Minneapolis, MN 55455, USA
orcid

Research Focus & Metrics

Academic Career Length

32Years (1995-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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11 July 2001 in Proteins: Structure, Function, and Bioinformatics
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Journal Article
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CTChung‐Jung Tsai
Chung‐Jung Tsai
Buyong MaBuyong Ma
Buyong Ma
Yuk ShamYuk Sham
Yuk Sham
SKSandeep Kumar
Sandeep Kumar
RNRuth Nussinov
Ruth Nussinov

1 January 2001 in IBM Systems Journal
Verified
Journal Article
Closed access
FAF. Allen
F. Allen
GAG. Almasi
G. Almasi
WAW. Andreoni
W. Andreoni
DBD. Beece
D. Beece
BBB. J. Berne
B. J. Berne
RZRuhong Zhou
Ruhong Zhou

1 April 1998 in Biophysical Journal
Verified
Journal Article
Closed access
Yuk ShamYuk Sham
Yuk Sham
IMIngo Muegge
Ingo Muegge
AWArieh Warshel
Arieh Warshel

24 October 2000 in Proceedings of the National Academy of Sciences
Verified
Journal Article
Closed access
JVJordi Villà-freixa
Jordi Villà-freixa
MŠM. Štrajbl
M. Štrajbl
TGT. M. Glennon
T. M. Glennon
Yuk ShamYuk Sham
Yuk Sham
ZCZ. T. Chu
Z. T. Chu
AWA. Warshel
A. Warshel
The idea that enzymes accelerate their reactions by entropic effects has played a major role in many prominent proposals about the origin of enzyme catalysis. This idea implies that the binding to an enzyme active site freezes the motion of the reacting fragments and eliminates their entropic contributions, (Δ S cat ‡ )′, to the activation energy. It is also implied that the binding entropy is equal to the activation entropy, (Δ S w ‡ )′, of the corresponding solution reaction. It is, however, difficult to examine this idea by experimental approaches. The present paper defines the entropic proposal in a rigorous way and develops a computer simulation approach that determines (Δ S ‡ )′. This approach allows us to evaluate the differences between (Δ S ‡ )′ of an enzymatic reaction and of the corresponding reference reaction in solution. Our approach is used in a study of the entropic contribution to the catalytic reaction of subtilisin. It is found that this contribution is much smaller than previously thought. This result is due to the following: ( i ) Many of the motions that are free in the reactants state of the reference solution reaction are also free at the transition state. ( ii ) The binding to the enzyme does not completely freeze the motion of the reacting fragments so that (Δ S ‡ )′ in the enzymes is not zero. ( iii ) The binding entropy is not necessarily equal to (Δ S w ‡ )′.

12 April 2000 in The Journal of Physical Chemistry B
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Journal Article
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MSMarek Strajbl
Marek Strajbl
Yuk ShamYuk Sham
Yuk Sham
JVJordi Villà-freixa
Jordi Villà-freixa
ZCZ.-T. Chu
Z.-T. Chu
AWArieh Warshel
Arieh Warshel

17 January 2014 in Journal of Medicinal Chemistry
Verified
Journal Article
Closed access
CZChunlin Zhuang
Chunlin Zhuang
SNSreekanth Narayanapillai
Sreekanth Narayanapillai
WZWannian Zhang
Wannian Zhang
Yuk ShamYuk Sham
Yuk Sham
CXChengguo Xing
Chengguo Xing