Andrew Sinkoe

Andrew Sinkoe


Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 May 2016 in Metabolic Engineering
Verified
Journal Article
Closed access
JJJ. Andrew Jones
J. Andrew Jones
VVVictoria R. Vernacchio
Victoria R. Vernacchio
ASAndrew Sinkoe
Andrew Sinkoe
SCShannon M. Collins
Shannon M. Collins
MIMohammad H.A. Ibrahim
Mohammad H.A. Ibrahim
Mattheos KoffasMattheos Koffas
Mattheos Koffas

1 September 2017 in Processes
Verified
Journal Article
Open access
PDF file
ASAndrew Sinkoe
Andrew Sinkoe
Juergen HahnJuergen Hahn
Juergen Hahn
IL-6 signaling plays an important role in inflammatory processes in the body. While a number of models for IL-6 signaling are available, the parameters associated with these models vary from case to case as they are non-trivial to determine. In this study, optimal experimental design is utilized to reduce the parameter uncertainty of an IL-6 signaling model consisting of ordinary differential equations, thereby increasing the accuracy of the estimated parameter values and, potentially, the model itself. The D-optimality criterion, operating on the Fisher information matrix and, separately, on a sensitivity matrix computed from the Morris method, was used as the objective function for the optimal experimental design problem. Optimal input functions for model parameter estimation were identified by solving the optimal experimental design problem, and the resulting input functions were shown to significantly decrease parameter uncertainty in simulated experiments. Interestingly, the determined optimal input functions took on the shape of PRBS signals even though there were no restrictions on their nature. Future work should corroborate these findings by applying the determined optimal experimental design on a real experiment.