Significantly increased sedimentation rates (SRs) in lakes worldwide in recent decades due to higher inputs of silt and eutrophication have led to significant environmental problems such as lake size diminishment and degraded water quality. Many lakes in the middle and lower reaches of the Yangtze River basin (MLYB) have followed this pattern. For effective lake management, it is essential to understand the pattern and drivers of SRs in these lakes. Fourteen typical lakes in the MLYB were chosen to examine the spatiotemporal patterns of SRs and identify the drivers over different time periods. Since 1900, SRs increased from <0.2 to 0.3–0.6 g·cm⁻²·year⁻¹, particularly notable during 1930–1990. Combined with climatic factors, SR correlated negatively with lake (catchment) size and abundance of aquatic vegetation, whereas other lake features including nutrient status did not contribute significantly to the variation in SRs, due to the fast decomposition processes of organic matter in shallow lakes. Detrimental land use practices especially reclamation for croplands and rapid urbanization was revealed to elevate SRs pronouncedly. We propose various management strategies aiming to maintain SR reference condition at ~0.16 ± 0.08 g·cm⁻²·year⁻¹, which is analogous to the SR value between 1850 and 1900.

The reference condition and historical variability of aquatic ecosystems are key ecological characters for understanding the dynamic and ecological assessment of wetland systems. Based on high-resolution chronological sequences of diatom records from 10 lakes in the Yangtze floodplain, this study aims to determine their ecological and chemical reference conditions, the historical variability and its controlling factors. Mesotrophic species Aulacoseria granulata, along with non-planktonic species Fragilaria spp., Navicula spp., Cocconeis placentula, Achnanthidium minutissimum, Cymbella spp. etc, were most abundant in the reference samples (1800–50). Accordingly, a relatively high chemical reference (50 µg L–1 in diatom-inferred total phosphorus concentration) was defined. The degree of floristic change comparing present with reference samples reveals that six of the 10 lakes have undergone significant ecological changes. The historical variability in those lakes was found to be regulated by the distance from the Yangtze River (negatively) and the lake catchment area (positively). This reflects the mechanism driving ecological change in floodplain lakes: the ecological conditions were sensitive to the nutrient input from the catchment and disturbance by the Yangtze River. This study demonstrates the robustness of palaeolimnological techniques in reconstructing the historical ecological characters of lake ecosystems, which may provide essential information for the management of wider types of wetland.