Zuomin Shi

Prof. Dr. Zuomin Shi

orcid

Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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30 July 2022 in Journal of Fungi
Verified
Journal Article
Open access
PDF file
JCJian Chen
Jian Chen
ZSZuomin Shi
Zuomin Shi
SLShun Liu
Shun Liu
MZMiaomiao Zhang
Miaomiao Zhang
XCXiangwen Cao
Xiangwen Cao
FQfeng qiuhong
feng qiuhong
Soil fungi play an integral and essential role in maintaining soil ecosystem functions. The understanding of altitude variations and their drivers of soil fungal community composition and diversity remains relatively unclear. Mountains provide an open, natural platform for studying how the soil fungal community responds to climatic variability at a short altitude distance. Using the Illumina MiSeq high-throughput sequencing technique, we examined soil fungal community composition and diversity among seven vegetation types (dry valley shrub, valley-mountain ecotone broadleaved mixed forest, subalpine broadleaved mixed forest, subalpine coniferous-broadleaved mixed forest, subalpine coniferous forest, alpine shrub meadow, alpine meadow) along a 2582 m altitude gradient in the alpine–gorge region on the eastern Qinghai–Tibetan Plateau. Ascomycota (47.72%), Basidiomycota (36.58%), and Mortierellomycota (12.14%) were the top three soil fungal dominant phyla in all samples. Soil fungal community composition differed significantly among the seven vegetation types along altitude gradients. The α-diversity of soil total fungi and symbiotic fungi had a distinct hollow pattern, while saprophytic fungi and pathogenic fungi showed no obvious pattern along altitude gradients. The β-diversity of soil total fungi, symbiotic fungi, saprophytic fungi, and pathogenic fungi was derived mainly from species turnover processes and exhibited a significant altitude distance-decay pattern. Soil properties explained 31.27−34.91% of variation in soil fungal (total and trophic modes) community composition along altitude gradients, and the effects of soil nutrients on fungal community composition varied by trophic modes. Soil pH was the main factor affecting α-diversity of soil fungi along altitude gradients. The β-diversity and turnover components of soil total fungi and saprophytic fungi were affected by soil properties and geographic distance, while those of symbiotic fungi and pathogenic fungi were affected only by soil properties. This study deepens our knowledge regarding altitude variations and their drivers of soil fungal community composition and diversity, and confirms that the effects of soil properties on soil fungal community composition and diversity vary by trophic modes along altitude gradients in the alpine–gorge region.

30 October 2017 in Forests
Verified
Journal Article
Open access
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DLDa Luo
Da Luo
RCRuimei Cheng
Ruimei Cheng
ZSZuomin Shi
Zuomin Shi
WWWeixia Wang
Weixia Wang
Leaf and root litter decomposition has been a major research focus. However, the possible effects of belowground microbial community structure and diversity on this process are poorly understood. Understanding the biochemical mechanisms controlling aboveground decomposition processes is important to predict the changes of soil carbon and nutrient cycling in response to changes of forest management regimes. Here, we explore the biochemical controls of leaf and fine root decomposition in three subtropical plantations (Ford Erythrophleum (Erythrophleum fordii Oliver), Masson Pine (Pinus massoniana Lamb.)), and a mixed plantation containing both species) using the litterbag method, and soil microbial communities were determined using phospholipid fatty acid profiles. Overall, leaves decomposed more rapidly than fine roots, potentially due to the faster degradation of their cellulose component, but not lignin. In addition, leaf and fine root decomposition rates varied among plantations, being higher in E. fordii and lower in P. massoniana. Substrate quality such as N, Ca, lignin concentration, and C/N ratio were responsible for the decomposition rate changes among plantation types. Moreover, we used redundancy analysis to examine the relationships between litter decomposition and soil microbial community composition and diversity. Results revealed that actinobacteria and arbuscular mycorrhizal fungi community were the key determinants affecting leaf and fine root litter decomposition, respectively. Our work demonstrates that litter decomposition was linked to substrate quality and to the structure of soil microbial communities, and evidences the probable role of E. fordii in increasing soil nutrient availability, especially N, P and Ca. Additional data on phospholipid fatty acid (PLFA) or DNA marker groups within the litterbags over time may provide insights into litter decomposition dynamics, which represents potential objectives for future long-term decomposition studies.

4 June 2022 in Plant and Soil
Verified
Journal Article
Closed access
PDF file
XCXiangwen Cao
Xiangwen Cao
ZSZuomin Shi
Zuomin Shi
JCJian Chen
Jian Chen
SLShun Liu
Shun Liu
MZMiaomiao Zhang
Miaomiao Zhang
FLFeifan Li
Feifan Li

18 January 2023 in Frontiers in Microbiology
Verified
Journal Article
Open access
SLShun Liu
Shun Liu
GXGexi Xu
Gexi Xu
HCHuanhuan Chen
Huanhuan Chen
MZMiaomiao Zhang
Miaomiao Zhang
XCXiangwen Cao
Xiangwen Cao
ZSZuomin Shi
Zuomin Shi
Soil microbial community composition and extracellular enzyme activity are two main drivers of biogeochemical cycling. Knowledge about their elevational patterns is of great importance for predicting ecosystem functioning in response to climate change. Nevertheless, there is no consensus on how soil microbial community composition and extracellular enzyme activity vary with elevation, and little is known about their elevational variations on the eastern Qinghai-Tibetan Plateau, a region sensitive to global change. We therefore investigated the soil microbial community composition using phospholipid fatty acids (PLFAs) analysis, and enzyme activities at 2,820 m (coniferous and broadleaved mixed forest), 3,160 m (dark coniferous forest), 3,420 m (alpine dwarf forest), and 4,280 m (alpine shrubland) above sea level. Our results showed that soil microbial community composition and extracellular enzyme activities changed significantly along the elevational gradient. Biomass of total microbes, bacteria, and arbuscular mycorrhizal fungi at the highest elevation were the significantly lowest among the four elevations. In contrast, extracellular enzyme activities involved in carbon (C)-, nitrogen (N)-, and phosphorus (P)- acquiring exhibited the maximum values at the highest elevation. Total nutrients and available nutrients, especially P availability jointly explained the elevational pattern of soil microbial community, while the elevational variation of extracellular enzyme activities was dependent on total nutrients. Microbial metabolism was mainly C- and P-limited with an increasing C limitation but a decreasing P limitation along the elevational gradient, which was related significantly to mean annual temperature and total P. These results indicated a vital role of soil P in driving the elevational patterns of soil microbial community and metabolism. Overall, the study highlighted the contrasting responses of soil microbial biomass and extracellular enzyme activities to elevation, possibly suggesting the differences in adaption strategy between population growth and resource acquisition responding to elevation. The results provide essential information for understanding and predicting the response of belowground community and function to climate change on the eastern Qinghai-Tibetan Plateau.

18 July 2016 in Ecological Research
Verified
Journal Article
Closed access
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DLDa Luo
Da Luo
RCRuimei Cheng
Ruimei Cheng
ZSZuomin Shi
Zuomin Shi
WWWeixia Wang
Weixia Wang
GXGexi Xu
Gexi Xu
SLShirong Liu
Shirong Liu

17 December 2019 in Plant and Soil
Verified
Journal Article
Closed access
PDF file
GXGexi Xu
Gexi Xu
HCHuanhuan Chen
Huanhuan Chen
ZSZuomin Shi
Zuomin Shi
SLShun Liu
Shun Liu
XCXiangwen Cao
Xiangwen Cao
GZGuangdong Zhao
Guangdong Zhao