Shuji Kanamaru

Dr. Shuji Kanamaru

orcid

Research Focus & Metrics

Academic Career Length

25Years (2002-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 January 2002 in Nature
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Journal Article
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SKShuji Kanamaru
Shuji Kanamaru
PLPetr Leiman
Petr Leiman
VKVictor A. Kostyuchenko
Victor A. Kostyuchenko
PCPaul R. Chipman
Paul R. Chipman
VMVadim V. Mesyanzhinov
Vadim V. Mesyanzhinov
MRMichael G. Rossmann
Michael G. Rossmann

3 December 2010 in Virology Journal
Verified
Journal Article
Open access
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PLPetr Leiman
Petr Leiman
FAFumio Arisaka
Fumio Arisaka
MRMark J. Van Raaij
Mark J. Van Raaij
VKVictor A Kostyuchenko
Victor A Kostyuchenko
AAAnastasia A Aksyuk
Anastasia A Aksyuk
MRMichael Rossmann
Michael Rossmann
Remarkable progress has been made during the past ten years in elucidating the structure of the bacteriophage T4 tail by a combination of three-dimensional image reconstruction from electron micrographs and X-ray crystallography of the components. Partial and complete structures of nine out of twenty tail structural proteins have been determined by X-ray crystallography and have been fitted into the 3D-reconstituted structure of the "extended" tail. The 3D structure of the "contracted" tail was also determined and interpreted in terms of component proteins. Given the pseudo-atomic tail structures both before and after contraction, it is now possible to understand the gross conformational change of the baseplate in terms of the change in the relative positions of the subunit proteins. These studies have explained how the conformational change of the baseplate and contraction of the tail are related to the tail's host cell recognition and membrane penetration function. On the other hand, the baseplate assembly process has been recently reexamined in detail in a precise system involving recombinant proteins (unlike the earlier studies with phage mutants). These experiments showed that the sequential association of the subunits of the baseplate wedge is based on the induced-fit upon association of each subunit. It was also found that, upon association of gp53 (gene product 53), the penultimate subunit of the wedge, six of the wedge intermediates spontaneously associate to form a baseplate-like structure in the absence of the central hub. Structure determination of the rest of the subunits and intermediate complexes and the assembly of the hub still require further study.

17 August 2003 in Nature Structural & Molecular Biology
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Journal Article
Closed access
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VKVictor A Kostyuchenko
Victor A Kostyuchenko
PLPetr Leiman
Petr Leiman
PCPaul R Chipman
Paul R Chipman
SKShuji Kanamaru
Shuji Kanamaru
MRMark J. Van Raaij
Mark J. Van Raaij
MRMichael G Rossmann
Michael G Rossmann

1 June 2003 in Nature Structural & Molecular Biology
Verified
Journal Article
Closed access
MMMarc C Morais
Marc C Morais
SKShuji Kanamaru
Shuji Kanamaru
MBMohammed O Badasso
Mohammed O Badasso
JKJaya S Koti
Jaya S Koti
BOBarbara A L Owen
Barbara A L Owen
MRMichael G Rossmann
Michael G Rossmann

1 May 2013 in Journal of Molecular Biology
Verified
Journal Article
Closed access
AFAndrei Fokine
Andrei Fokine
ZZZhihong Zhang
Zhihong Zhang
SKShuji Kanamaru
Shuji Kanamaru
VBValorie D. Bowman
Valorie D. Bowman
AAAnastasia A. Aksyuk
Anastasia A. Aksyuk
MRMichael Rossmann
Michael Rossmann

1 September 2004 in Journal of Biological Chemistry
Verified
Journal Article
Open access
PDF file
SKShuji Kanamaru
Shuji Kanamaru
KKKiran Kondabagil
Kiran Kondabagil
MRMichael G. Rossmann
Michael G. Rossmann
VRVenigalla B Rao
Venigalla B Rao
The packaging of double-stranded genomic DNA into some viral and all bacteriophage capsids is driven by powerful molecular motors. In bacteriophage T4, the motor consists of the portal protein assembly composed of twelve copies of gene product 20 (gp20, 61 kDa) and an oligomeric terminase complex composed of gp16 (18 kDa) and gp17 (70 kDa). The packaging motor drives the 171-kbp T4 DNA into the capsid utilizing the free energy of ATP hydrolysis. Evidence suggests that gp17 is the key component of the motor; it exhibits ATPase, nuclease, and in vitro DNA-packaging activities. The N- and C-terminal halves of gp17 were expressed and purified to homogeneity and found to have ATPase and nuclease activities, respectively. The N-terminal domain exhibited 2–3-fold higher Kcat values for gp16-stimulated ATPase than the full-length gp17. Neither of the domains, individually or together, exhibited in vitro DNA-packaging activity, suggesting that communication between the domains is essential for DNA packaging. The domains, in particular the C-terminal domain or a mixture of both the N- and C-terminal domains, inhibited in vitro DNA packaging that is catalyzed by full-length gp17. In conjunction with genetic evidence, these data suggest that the domains compete with the full-length gp17 for binding sites on the portal protein. A model for the assembly of the T4 DNA-packaging machine is presented.