Despite the unprecedented performance of deep neural networks (DNNs) in computer vision, their clinical application in the diagnosis and prognosis of cancer using medical imaging has been limited. One of the critical challenges for integrating diagnostic DNNs into radiological and oncological applications is their lack of interpretability, preventing clinicians from understanding the model predictions. Therefore, we studied and propose the integration of expert-derived radiomics and DNN-predicted biomarkers in interpretable classifiers, which we refer to as ConRad, for computerized tomography (CT) scans of lung cancer. Importantly, the tumor biomarkers can be predicted from a concept bottleneck model (CBM) such that once trained, our ConRad models do not require labor-intensive and time-consuming biomarkers. In our evaluation and practical application, the only input to ConRad is a segmented CT scan. The proposed model was compared to convolutional neural networks (CNNs) which act as a black box classifier. We further investigated and evaluated all combinations of radiomics, predicted biomarkers and CNN features in five different classifiers. We found the ConRad models using nonlinear SVM and the logistic regression with the Lasso outperformed the others in five-fold cross-validation, with the interpretability of ConRad being its primary advantage. The Lasso is used for feature selection, which substantially reduces the number of nonzero weights while increasing the accuracy. Overall, the proposed ConRad model combines CBM-derived biomarkers and radiomics features in an interpretable ML model which demonstrates excellent performance for lung nodule malignancy classification.
Mental health counseling remains a major challenge in modern society due to cost, stigma, fear, and unavailability. We posit that generative artificial intelligence (AI) models designed for mental health counseling could help improve outcomes by lowering barriers to access. To this end, we have developed a deep learning (DL) dialogue system called Serena. The system consists of a core generative model and post-processing algorithms. The core generative model is a 2.7 billion parameter Seq2Seq Transformer fine-tuned on thousands of transcripts of person-centered-therapy (PCT) sessions. The series of post-processing algorithms detects contradictions, improves coherency, and removes repetitive answers. Serena is implemented and deployed on \url{https://serena.chat}, which currently offers limited free services. While the dialogue system is capable of responding in a qualitatively empathetic and engaging manner, occasionally it displays hallucination and long-term incoherence. Overall, we demonstrate that a deep learning mental health dialogue system has the potential to provide a low-cost and effective complement to traditional human counselors with less barriers to access.
Despite excellent performance of deep neural networks (DNNs) in image classification, detection, and prediction, characterizing how DNNs make a given decision remains an open problem, resulting in a number of interpretability methods. Post-hoc interpretability methods primarily aim to quantify the importance of input features with respect to the class probabilities. However, due to the lack of ground truth and the existence of interpretability methods with diverse operating characteristics, evaluating these methods is a crucial challenge. A popular approach to evaluate interpretability methods is to perturb input features deemed important for a given prediction and observe the decrease in accuracy. However, perturbation itself may introduce artifacts. We propose a method for estimating the impact of such artifacts on the fidelity estimation by utilizing model accuracy curves from perturbing input features according to the Most Import First (MIF) and Least Import First (LIF) orders. Using the ResNet-50 trained on the ImageNet, we demonstrate the proposed fidelity estimation of four popular post-hoc interpretability methods.