Lohendy Muñoz-Vargas

Dr. Lohendy Muñoz-Vargas


Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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11 May 2018 in PLOS ONE
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Journal Article
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LMLohendy Muñoz-Vargas
Lohendy Muñoz-Vargas
SOStephen O. Opiyo
Stephen O. Opiyo
RDRose Digianantonio
Rose Digianantonio
MWMichele L. Williams
Michele L. Williams
AWAsela Wijeratne
Asela Wijeratne
GHGregory G. Habing
Gregory G. Habing
Non-typhoidal Salmonella enterica is a zoonotic pathogen with critical importance in animal and public health. The persistence of Salmonella on farms affects animal productivity and health, and represents a risk for food safety. The intestinal microbiota plays a fundamental role in the colonization and invasion of this ubiquitous microorganism. To overcome the colonization resistance imparted by the gut microbiome, Salmonella uses invasion strategies and the host inflammatory response to survive, proliferate, and establish infections with diverse clinical manifestations. Cattle serve as reservoirs of Salmonella, and periparturient cows have high prevalence of Salmonella shedding; however, little is known about the association between the gut microbiome and the onset of Salmonella shedding during the periparturient period. Thus, the objective of this study was to assess the association between changes in bacterial communities and the onset of Salmonella shedding in cattle approaching parturition. In a prospective cohort study, fecal samples from 98 dairy cows originating from four different farms were collected at four time points relative to calving (-3 wks, -1 wk, +1 wk, +3 wks). All 392 samples were cultured for Salmonella. Sequencing of the V4 region of the 16S rRNA gene using the Illumina platform was completed to evaluate the fecal microbiome in a selected sample subset. Analyses of microbial composition, diversity, and structure were performed according to time points, farm, and Salmonella onset status. Individual cow fecal microbiomes, predominated by Bacteroidetes, Firmicutes, Spirochaetes, and Proteobacteria phyla, significantly changed before and after parturition. Microbial communities from different farms were distinguishable based on multivariate analysis. Although there were significant differences in some bacterial taxa between Salmonella positive and negative samples, our results did not identify differences in the fecal microbial diversity or structure for cows with and without the onset of Salmonella shedding. These data suggest that determinants other than the significant changes in the fecal microbiome influence the periparturient onset of Salmonella shedding in dairy cattle.

21 September 2022 in PLOS ONE
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OROlga Rivas-Solano
Olga Rivas-Solano
MHMathilde Van der Henst
Mathilde Van der Henst
ACAmanda Castillo-Zeledón
Amanda Castillo-Zeledón
MSMarcela Suárez-Esquivel
Marcela Suárez-Esquivel
LMLohendy Muñoz-Vargas
Lohendy Muñoz-Vargas
CGCaterina Guzmán-Verri
Caterina Guzmán-Verri
Brucella abortusis a facultative intracellular pathogen causing a severe zoonotic disease worldwide. The two-component regulatory system (TCS) BvrR/BvrS ofB.abortusis conserved in members of theAlphaproteobacteriaclass. It is related to the expression of genes required for host interaction and intracellular survival. Here we report thatbvrRandbvrSare part of an operon composed of 16 genes encoding functions related to nitrogen metabolism, DNA repair and recombination, cell cycle arrest, and stress response. Synteny of this genomic region within closeAlphaproteobacteriamembers suggests a conserved role in coordinating the expression of carbon and nitrogen metabolic pathways. In addition, we performed a ChIP-Seq analysis after exposure of bacteria to conditions that mimic the intracellular environment. Genes encoding enzymes at metabolic crossroads of the pentose phosphate shunt, gluconeogenesis, cell envelope homeostasis, nucleotide synthesis, cell division, and virulence are BvrR/BvrS direct targets. A 14 bp DNA BvrR binding motif was found and investigated in selected gene targets such asvirB1,bvrR,pckA,omp25, andtamA. Understanding gene expression regulation is essential to elucidate howBrucellaorchestrates a physiological response leading to a furtive pathogenic strategy.

1 December 2021 in Journal of Food Protection
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Journal Article
Closed access
SLSabrina Lazo-Láscarez
Sabrina Lazo-Láscarez
LGLeana Zumbado Gutiérrez
Leana Zumbado Gutiérrez
FDFrancisco Duarte-Martínez
Francisco Duarte-Martínez
JZJuan José Romero Zúñiga
Juan José Romero Zúñiga
MEMaría Laura Arias Echandi
María Laura Arias Echandi
LMLohendy Muñoz-Vargas
Lohendy Muñoz-Vargas
Campylobacter spp. is considered the most common bacterial cause of human gastroenteritis, one of the four main causes of diarrheal disease worldwide, and one of the main foodborne pathogens causing hospitalizations and deaths. A total of 148 strains of Campylobacter spp. isolated from poultry at farms, processing plants and retail stores in Costa Rica were examined for resistance to six antibiotics. An agar dilution test was used to determine the minimum inhibitory concentration and susceptibility profiles against doxycycline, ciprofloxacin, nalidixic acid, enrofloxacin, chloramphenicol and erythromycin. In addition, a PFGE analysis was carried out to determine the genotype relatedness of a representative subset of the isolates. Around 92% (136/148) of the analyzed isolates showed resistance to the tested drugs. Nalidixic acid, ciprofloxacin and enrofloxacin, were the antibiotics for which resistance occurred most frequently (91.2%, 85.8% and 85.8%, respectively); followed by doxycycline (25.0%), chloramphenicol (5.4%) and erythromycin (2.7%). The profile conferring only resistance to quinolones was the most frequently found in this study, and only 2.0% of the isolates showed resistance to quinolones and macrolides simultaneously. Results showed a high frequency of resistant Campylobacter spp. strains, and evidenced the distribution, selection, and circulation of resistant strains along the poultry chain from farms to consumers. Cross contamination and resistance seem to play an important role in the dissemination of these strains at specific points of the poultry chain even when control measures are being taken. The establishment of effective surveillance and control strategies represents an essential tool for foodborne diseases mitigation. The rational use of antibiotics, especially those still showing efficacy, should be a priority issue in both human and veterinary medicine in order to contain the progress of this phenomenon and its consequences.

17 February 2022 in Frontiers in Veterinary Science
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Journal Article
Open access
LMLohendy Muñoz-Vargas
Lohendy Muñoz-Vargas
JPJessica A. Pempek
Jessica A. Pempek
KPKathryn Proudfoot
Kathryn Proudfoot
MEMaurice L. Eastridge
Maurice L. Eastridge
PRPäivi J. Rajala-Schultz
Päivi J. Rajala-Schultz
GHGregory G. Habing
Gregory G. Habing
Stressful conditions in animal production facilities may exacerbate the fecal shedding and foodborne transmission of non-typhoidal Salmonella enterica subsp. enterica. Dairy cows are reservoirs of this zoonotic microorganism, and its prevalence has roughly doubled in the past decade on dairy farms in United States. Dairy cows are commonly overstocked at the feed bunk, and stressors placed on the animal prior to parturition may exacerbate Salmonella shedding. However, no studies have evaluated the impact of overstocking and metabolic stress on fecal concentrations of the pathogen. Therefore, we conducted a field trial with 120 multiparous dairy cows randomized into one of four treatment groups with different stocking densities at the feed bunk during the periparturient period as follows: US, understocked from −60 to −1 DRC; OS, overstocked from −60 to −1 DRC; USOS, understocked from −60 to −26 DRC/overstocked from −25 to −1 DRC; and OSUS, overstocked from −60 to −26 DRC/ understocked from −25 to −1 DRC. Fecal and blood samples were collected at four time points relative to calving. qPCR assays were used to quantify Salmonella invA gene and total bacterial community from fecal samples, and a subset of isolates recovered from fecal bacterial culture were characterized using pulsed field gel electrophoresis and serotyping. Serum non-esterified fatty acids (NEFA) were measured as a metabolic stress indicator using an immunoassay. Multivariable analyses were performed to test if changes in Salmonella concentrations were associated with stocking density, energy balance, or days relative to calving. From fecal isolates, three Salmonella serovars were identified, S. Cerro; Kentucky; Meleagridis. Concentrations of Salmonella increased as cows approached calving. Higher stocking densities at the feed bunk did not impact total bacterial community or NEFA; however, cows in the overstocked groups had higher Salmonella fecal concentrations. Further, cows with higher NEFA concentrations after calving had a higher likelihood of detection of Salmonella. Future farm interventions should aim to reduce environmental and metabolic stress during the periparturient period to decrease the dissemination of Salmonella to cattle, the environment, and humans.

2 May 2023 in Antibiotics
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Journal Article
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ERErnesto Rojas-Sánchez
Ernesto Rojas-Sánchez
MJMauricio Jiménez-Soto
Mauricio Jiménez-Soto
EBElías Barquero-Calvo
Elías Barquero-Calvo
FDFrancisco Javier Duarte-Martínez
Francisco Javier Duarte-Martínez
DMDixie F. Mollenkopf
Dixie F. Mollenkopf
LMLohendy Muñoz-Vargas
Lohendy Muñoz-Vargas
Concern about zoonoses and wildlife has increased. Few studies described the role of wild mammals and environments in the epidemiology of Salmonella. Antimicrobial resistance is a growing problem associated with Salmonella that threatens global health, food security, the economy, and development in the 21st century. The aim of this study is to estimate the prevalence and identify antibiotic susceptibility profiles and serotypes of non-typhoidal Salmonella enterica recovered from non-human primate feces, feed offered, and surfaces in wildlife centers in Costa Rica. A total of 180 fecal samples, 133 environmental, and 43 feed samples from 10 wildlife centers were evaluated. We recovered Salmonella from 13.9% of feces samples, 11.3% of environmental, and 2.3% of feed samples. Non-susceptibility profiles included six isolates from feces (14.6%): four non-susceptible isolates (9.8%) to ciprofloxacin, one (2.4%) to nitrofurantoin, and one to both ciprofloxacin and nitrofurantoin (2.4%). Regarding the environmental samples, one profile was non-susceptible to ciprofloxacin (2.4%) and two to nitrofurantoin (4.8%). The serotypes identified included Typhimurium/I4,[5],12:i:-, S. Braenderup/Ohio, S. Newport, S. Anatum/Saintpaul, and S. Westhampton. The epidemiological surveillance of Salmonella and antimicrobial resistance can serve in the creation of strategies for the prevention of the disease and its dissemination throughout the One Health approach.

3 January 2023 in Animals
Verified
Journal Article
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VMValeria Molnar
Valeria Molnar
LMLohendy Muñoz-Vargas
Lohendy Muñoz-Vargas
JRJuan J. Romero-Zúñiga
Juan J. Romero-Zúñiga
GAGustavo Araya-Rodríguez
Gustavo Araya-Rodríguez
An effective frontal stunning procedure in water buffaloes was assessed using a pneumatic penetrating captive bolt (PPCB) with high air pressure. The study contemplated two phases; first, 352 buffaloes and 168 post-mortem heads were evaluated to determine the most effective anatomical site for stunning. Then, the second phase (n = 182) was used to validate the stunning procedure at the discovered anatomical site in the first phase, which was located 8 cm dorsal above the middle of the forehead on an “X” formed between the eyes and the base of the contralateral horns, and 2 cm lateral, avoiding the midline, where the skull tended to narrow. A total of 95.1% of buffaloes received effective stunning at the first shot with evidence of the presence of collapse, absence of rhythmic breathing, and absence of ocular reflexes (corneal and palpebral). There were no differences in the stunning efficacy by sex, breed, or skull thickness. These findings demonstrated that stunning with a PPCB at pressures of 1379–1516.8 KPa (200–220 pounds per square inch (psi)) in the site reported here produces a highly effective stunning at the first shot in water buffaloes.