Darko Bosnakovski

Dr. Darko Bosnakovski

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Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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23 March 2020 in Journal of Clinical Investigation
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Journal Article
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DBDarko Bosnakovski
Darko Bosnakovski
AAAhmed Saber Shams Ahmed
Ahmed Saber Shams Ahmed
CYCe Yuan
Ce Yuan
MSMeiricris T. da Silva
Meiricris T. da Silva
EEElizabeth T. Ener
Elizabeth T. Ener
MKMichael Kyba
Michael Kyba
Facioscapulohumeral muscular dystrophy (FSHD) is caused by loss of repression of the DUX4 gene; however, the DUX4 protein is rare and difficult to detect in human muscle biopsies, and pathological mechanisms are obscure. FSHD is also a chronic disease that progresses slowly over decades. We used the sporadic, low-level, muscle-specific expression of DUX4 enabled by the iDUX4pA-HSA mouse to develop a chronic long-term muscle disease model. After 6 months of extremely low sporadic DUX4 expression, dystrophic muscle presented hallmarks of FSHD histopathology, including muscle degeneration, capillary loss, fibrosis, and atrophy. We investigated the transcriptional profile of whole muscle as well as endothelial cells and fibroadiopogenic progenitors (FAPs). Strikingly, differential gene expression profiles of both whole muscle and, to a lesser extent, FAPs, showed significant overlap with transcriptional profiles of MRI-guided human FSHD muscle biopsies. These results demonstrate a pathophysiological similarity between disease in muscles of iDUX4pA-HSA mice and humans with FSHD, solidifying the value of chronic rare DUX4 expression in mice for modeling pathological mechanisms in FSHD and highlighting the importance FAPs in this disease.

6 September 2019 in Science Advances
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Journal Article
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DBDarko Bosnakovski
Darko Bosnakovski
MSMeiricris T. da Silva
Meiricris T. da Silva
SSSithara T. Sunny
Sithara T. Sunny
EEElizabeth T. Ener
Elizabeth T. Ener
ETErik A. Toso
Erik A. Toso
MKMichael Kyba
Michael Kyba
DUX4 drives global histone H3 hyperacetylation; and a new P300 inhibitor, iP300w, blocks DUX4-mediated transcription and toxicity.

12 October 2021 in Oncogenesis
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Journal Article
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DBDarko Bosnakovski
Darko Bosnakovski
EEElizabeth T. Ener
Elizabeth T. Ener
MCMark S. Cooper
Mark S. Cooper
MGMicah Gearhart
Micah Gearhart
KKKevin A. Knights
Kevin A. Knights
MKMichael Kyba
Michael Kyba
CIC-DUX4 sarcoma (CDS) is a highly aggressive and metastatic small round type of predominantly pediatric sarcoma driven by a fusion oncoprotein comprising the transcriptional repressor Capicua (CIC) fused to the C-terminal transcriptional activation domain of DUX4. CDS rapidly develops resistance to chemotherapy, thus novel specific therapies are greatly needed. We demonstrate that CIC-DUX4 requires P300/CBP to induce histone H3 acetylation, activate its targets, and drive oncogenesis. We describe the synthetic route to a selective and highly potent P300/CBP inhibitor named iP300w and related stereoisomers, and find that iP300w efficiently suppresses CIC-DUX4 transcriptional activity and reverses CIC-DUX4 induced acetylation. iP300w is active at 100-fold lower concentrations than related stereoisomers or A-485. At low doses, iP300w shows specificity to CDS cancer cell lines, rapidly inducing cell cycle arrest and preventing growth of established CDS xenograft tumors when delivered in vivo. The effectiveness of iP300w to inactivate CIC-DUX4 highlights a promising therapeutic opportunity for CDS.

20 March 2024 in Nature Genetics
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MVMaria Vega-Sendino
Maria Vega-Sendino
FLFelipe F. Lüttmann
Felipe F. Lüttmann
TOTeresa Olbrich
Teresa Olbrich
YCYanpu Chen
Yanpu Chen
CKCarsten Kuenne
Carsten Kuenne
SRSergio Ruiz
Sergio Ruiz

Verified
Journal Article
Open access
PDF file
DBDarko Bosnakovski
Darko Bosnakovski
DODavid Oyler
David Oyler
AMAna Mitanoska
Ana Mitanoska
MDMadison Douglas
Madison Douglas
EEElizabeth T. Ener
Elizabeth T. Ener
MKMichael Kyba
Michael Kyba
FSHD is caused by loss of silencing of the DUX4 gene, but the DUX4 protein has not yet been directly detected immunohistologically in affected muscle, raising the possibility that DUX4 expression may occur at time points prior to obtaining adult biopsies for analysis, with consequent perturbations of muscle being responsible for disease progression. To test the extent to which muscle can regenerate following DUX4-mediated degeneration, we employed an animal model with reversible DUX4 expression, the iDUX4pA;HSA mouse. We find that muscle histology does recover substantially after DUX4 expression is switched off, with the extent of recovery correlating inversely with the duration of prior DUX4 expression. However, despite fairly normal muscle histology, and recovery of most cytological parameters, the fibroadipogenic progenitor compartment, which is significantly elevated during bouts of fiber-specific DUX4 expression, does not return to basal levels, even many weeks after a single burst of DUX4 expression. We find that muscle that has recovered from a DUX4 burst acquires a propensity for severe fibrosis, which can be revealed by subsequent cardiotoxin injuries. These results suggest that a past history of DUX4 expression leads to maintained pro-fibrotic alterations in the cellular physiology of muscle, with potential implications for therapeutic approaches.

2 September 2023 in iScience
Verified
Journal Article
Open access
DBDarko Bosnakovski
Darko Bosnakovski
ETErik Toso
Erik Toso
EEElizabeth T. Ener
Elizabeth T. Ener
MGMicah Gearhart
Micah Gearhart
LYLulu Yin
Lulu Yin
MKMichael Kyba
Michael Kyba