Alberto Abad Uribarren

Dr. Alberto Abad Uribarren

orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
17 June 2022 in Estuarine, Coastal and Shelf Science
Verified
Journal Article
Open access
AUAlberto Abad Uribarren
Alberto Abad Uribarren
EPElena Prado
Elena Prado
SSSergio Sierra
Sergio Sierra
ACAdolfo Cobo
Adolfo Cobo
ARAugusto Rodríguez-Basalo
Augusto Rodríguez-Basalo
FSFrancisco Sánchez
Francisco Sánchez

26 May 2023 in Remote Sensing
Verified
Journal Article
Open access
PDF file
EOElena Prado Ortega
Elena Prado Ortega
AUAlberto Abad Uribarren
Alberto Abad Uribarren
RRRubén Ramo
Rubén Ramo
SSSergio Sierra
Sergio Sierra
CGCésar González-Pola
César González-Pola
FSFrancisco Sánchez
Francisco Sánchez
Gorgonians play a fundamental role in the deep sea (below 200 m depth), composing three-dimensional habitats that are characterized by a high associated biodiversity and playing an important part in biogeochemical cycles. Here we describe the use of a benthic lander to monitoring polyps activity, used as a proxy of gorgonian feeding activity of three colonies of Placogorgia sp. Images cover a period of 22 days with a temporal resolution of 30 min. In addition, this seafloor observatory is instrumented with oceanographic sensors that allows continuous monitoring of the hydrographic conditions in the site. Deep-learning is used for automatic detection of the state of the polyps registered in the images. More than 1000 images of 3 large specimens of gorgonians are analyzed, annotating polyps as extended or retracted, using the semantic segmentation algorithm ConvNeXt. The segmentation results are used to describe the feeding patterns of this species. Placogorgia sp. shows a daily pattern of feeding conduct, depending on the hours of day and night. Using a Singular Spectrum Analysis approach, feeding activity is related to currents dynamics and Acoustic Doppler Current Profile (ADCP) return signal intensity, as proxy of suspended matter, achieving a linear correlation of 0.35 and 0.11 respectively. This is the first time that the behavior of the Placogorgia polyps, directly related to their feeding process, is described.

Verified
Journal Article
Open access
PDF file
AGAlberto Gayá-Vilar
Alberto Gayá-Vilar
AUAlberto Abad Uribarren
Alberto Abad Uribarren
ARAugusto Rodríguez
Augusto Rodríguez
PRPilar Ríos
Pilar Ríos
JCJavier Cristobo
Javier Cristobo
EOElena Prado Ortega
Elena Prado Ortega
Cold-water coral (CWC) reefs, such as those formed by Desmophyllum pertusum and Madrepora oculata, are vital yet vulnerable marine ecosystems (VMEs). The need for accurate and efficient monitoring of these habitats has driven the exploration of innovative approaches. This study presents a novel application of the YOLOv8l-seg deep learning model for the automated detection and segmentation of these key CWC species in underwater imagery. The model was trained and validated on images collected at two Natura 2000 sites in the Cantabrian Sea: the Avilés Canyon System (ACS) and El Cachucho Seamount (CSM). Results demonstrate the model’s high accuracy in identifying and delineating individual coral colonies, enabling the assessment of coral cover and spatial distribution. The study revealed significant variability in coral cover between and within the study areas, highlighting the patchy nature of CWC habitats. Three distinct coral community groups were identified based on percentage coverage composition and abundance, with the highest coral cover group being located exclusively in the La Gaviera canyon head within the ACS. This research underscores the potential of deep learning models for efficient and accurate monitoring of VMEs, facilitating the acquisition of high-resolution data essential for understanding CWC distribution, abundance, and community structure, and ultimately contributing to the development of effective conservation strategies.

1 October 2019 in Fisheries Oceanography
Verified
Journal Article
Closed access
PDF file
AUAlberto Abad Uribarren
Alberto Abad Uribarren
SOSofia Ortega-García
Sofia Ortega-García
DMDavid March
David March
AMAntonio Medina
Antonio Medina

12 August 2024 in Preprints.org
Verified
Preprint
Open access
PDF file
AGAlberto Gayá-Vilar
Alberto Gayá-Vilar
AUAlberto Abad Uribarren
Alberto Abad Uribarren
ARAugusto Rodríguez
Augusto Rodríguez
PRPilar Ríos
Pilar Ríos
JCJavier Cristobo
Javier Cristobo
EOElena Prado Ortega
Elena Prado Ortega
Cold-water coral (CWC) reefs represent vulnerable marine ecosystems (VMEs) of critical ecological importance. This study presents a novel approach for the automated detection and segmentation of key CWC species, Desmophyllum pertusum and Madrepora oculata, in underwater imagery using the YOLOv8l-seg deep learning model. The model was applied to images collected at two Natura 2000 sites in the Cantabrian Sea: the Avilés Canyon System (ACS) and El Cachucho Seamount (CSM). Results demonstrate the model's high accuracy in identifying and delineating individual coral colonies. Significant variability in coral cover was observed between and within the study areas, highlighting the patchy nature of CWC habitats. Three distinct coral community groups were identified based on percentage coverage composition and abundance, with the highest coral cover group being located exclusively in the La Gaviera canyon head within the ACS. This research demonstrated the potential of deep learning models for efficient and accurate monitoring of VMEs, facilitating the acquisition of high-resolution data essential for understanding CWC distribution, abundance, and community structure, and contributing to the development of effective conservation strategies.