This paper presents abundances of major and trace elements of apatites in granitic rocks associated with different types of ore deposits in Central Kazakhstan on the basis of electron probe microanalysis and laser ablation inductively coupled plasma mass spectrometry. Our results demonstrate that the concentrations and ratios of elements in apatites from different granitoid rocks show distinct features, and are sensitive to magma evolution, petrogenetic and metallogenetic processes. Apatites in the rocks associated with Mo‐W deposits have high content of F and MnO, low content of Cl, which may be indicative of sedimentary sources, while apatites from a Pb‐Zn deposit show relatively high content of Cl and low F content, which possibly suggest a high water content. In these apatites, Sr contents decrease, while Mn and Y contents increase with magma evolution. This relationship reflects that these elements in apatites are related with the degree of magmatic differentiation. Four types of REE patterns in apatites are identified. Type 1 character of highest (La/Yb)_Nin apatites of Aktogai porphyry Cu‐Mo deposit, Sayak‐I skarn Cu deposit and Akzhal skarn Pb‐Zn depposit is likely produced by the crystallization of heavy REE‐enriched minerals. Type 2 character of upward‐convex light REE in apatite of Aktogai porphyries likely results from La‐enriched mineral crystallization. Type 3 feature of Nd depletion in apatites of East Kounrad and Zhanet deposits both from Mo‐W deposits primarily inherits the character of host‐rock. Type 4 apatites of Aktogai deposit and Akshatau W‐Mo deposit with wide range of REE contents may suggest that apatites crystallize under a wide temperature range. Three types of apatite with distinct redox states are identified based on Eu anomaly. The Aktogai apatite with slight negative Eu anomaly displays the most oxidized state of the magma, and the apatites of other samples at Aktogai, East Kounrad and Akzhal with moderate negative Eu anomaly show moderate oxidizing condition of these rocks, while the remaining apatites with strong En anomaly indicate a moderate reductive state of these rocks.

Most mineralized porphyries associated with large to giant oxidized porphyry Cu deposits show an affinity with high Sr/Y rocks, while barren or weakly mineralized granitoids show typical low Sr/Y features. The Aktogai giant porphyry Cu deposit occurs in the Koldar pluton and provides a good natural laboratory in which to investigate this relationship, while determining the petrogenesis of the pluton and its mineralization. Zircon U-Pb dating, mineral chemistry, whole rock geochemistry and Sr-Nd-Pb and zircon Hf-O isotopic analyses were carried out on the pre-ore granodiorite (the major component of the Koldar pluton) and on the mineralized granodiorite porphyry. Zircon U-Pb ages indicate that the pre-ore granodiorite and mineralized granodiorite porphyries were emplaced at 345 and 328 to 331 Ma, respectively. Distinctly higher apatite SO₃ contents in the granodiorite porphyry relative to the granodiorite suggest an increase in fO₂ during the petrogenesis of the mineralized porphyries (>NNO+1). Although all rocks share similar geochemical characteristics (calc-alkaline, strong depletion in Nb, Ta and Ti, and enrichment in LREE and LILE), the pre-ore Koldar pluton has normal arc related magmatic features [low Sr/Y and (La/Yb)_N, high Y and Yb_N], while the granodiorite porphyries and diorite (trace component of Koldar pluton) exhibit high Sr/Y and (La/Yb)_N, low Y and Yb_N features. All samples show similar Sr-Nd-Pb-Hf-O isotopic compositions [(⁸⁷Sr/⁸⁶Sr)_i = 0.70369 to 0.70413, ε_Nd (t) = + 3.6 to + 5.6, (²⁰⁶Pb/²⁰⁴Pb)_i = 18.16 to 19.32, zircon ε_Hf (t) = + 11.8 to + 15.9, and δ¹⁸O = + 3.8 to + 5.9 ‰], and very young whole rock T₂DM (Nd) (640 – 680 Ma) and zircon T_DM^C (Hf) (320 – 590 Ma) values, suggesting that they were probably derived from partial melting of juvenile lower crust. Geochemical patterns and partial melt modeling indicate that the high Sr/Y rocks were probably formed by partial melting of eclogitized, thickened lower crust, while the Koldar pluton formed by partial melting of normal thick lower crust. We propose that pre-ore low Sr/Y rocks were probably generated earlier via subduction of Junggar-Balkhash oceanic crust, and that the high Sr/Y rocks were formed later by partial melting of sulfide-enriched, thickened juvenile lower crust. High oxygen fugacity and the high melting temperature of the high Sr/Y rocks ensured that all sulfide was dissolved in the magma, which intruded the previously emplaced low Sr/Y pluton and resulted in significant mineralization.