Jie Xu

Dr. Jie Xu

orcid

Research Focus & Metrics

Academic Career Length

20Years (2007-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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6 September 2022 in EBioMedicine
Verified
Journal Article
Open access
Jie XuJie Xu
Jie Xu
YXYunyu Xiao
Yunyu Xiao
WWWendy Hui Wang
Wendy Hui Wang
YNYue Ning
Yue Ning
ESElizabeth A. Shenkman
Elizabeth A. Shenkman
FWFei Wang
Fei Wang
Machine learning models are increasingly adopted for facilitating clinical decision-making. However, recent research has shown that machine learning techniques may result in potential biases when making decisions for people in different subgroups, which can lead to detrimental effects on the health and well-being of specific demographic groups such as vulnerable ethnic minorities. This problem, termed algorithmic bias, has been extensively studied in theoretical machine learning recently. However, the impact of algorithmic bias on medicine and methods to mitigate this bias remain topics of active discussion. This paper presents a comprehensive review of algorithmic fairness in the context of computational medicine, which aims at improving medicine with computational approaches. Specifically, we overview the different types of algorithmic bias, fairness quantification metrics, and bias mitigation methods, and summarize popular software libraries and tools for bias evaluation and mitigation, with the goal of providing reference and insights to researchers and practitioners in computational medicine.

27 January 2021 in JMIR Medical Informatics
Verified
Journal Article
Open access
AVAkhil Vaid
Akhil Vaid
SJSuraj K Jaladanki
Suraj K Jaladanki
Jie XuJie Xu
Jie Xu
STShelly Teng
Shelly Teng
AKArvind Kumar
Arvind Kumar
BGBenjamin S Glicksberg
Benjamin S Glicksberg
Background: Machine learning models require large datasets that may be siloed across different health care institutions. Machine learning studies that focus on COVID-19 have been limited to single-hospital data, which limits model generalizability. Objective: We aimed to use federated learning, a machine learning technique that avoids locally aggregating raw clinical data across multiple institutions, to predict mortality in hospitalized patients with COVID-19 within 7 days. Methods: Patient data were collected from the electronic health records of 5 hospitals within the Mount Sinai Health System. Logistic regression with L1 regularization/least absolute shrinkage and selection operator (LASSO) and multilayer perceptron (MLP) models were trained by using local data at each site. We developed a pooled model with combined data from all 5 sites, and a federated model that only shared parameters with a central aggregator. Results: The LASSOfederated model outperformed the LASSOlocal model at 3 hospitals, and the MLPfederated model performed better than the MLPlocal model at all 5 hospitals, as determined by the area under the receiver operating characteristic curve. The LASSOpooled model outperformed the LASSOfederated model at all hospitals, and the MLPfederated model outperformed the MLPpooled model at 2 hospitals. Conclusions: The federated learning of COVID-19 electronic health record data shows promise in developing robust predictive models without compromising patient privacy.

23 February 2023 in Alzheimer's & Dementia
Verified
Journal Article
Open access
QLQian Li
Qian Li
XYXi Yang
Xi Yang
Jie XuJie Xu
Jie Xu
YGYi Guo
Yi Guo
XHXing He
Xing He
Jiang BianJiang Bian
Jiang Bian
Introduction: This study aims to explore machine learning (ML) methods for early prediction of Alzheimer's disease (AD) and related dementias (ADRD) using the real‐world electronic health records (EHRs).Methods: A total of 23,835 ADRD and 1,038,643 control patients were identified from the OneFlorida+ Research Consortium. Two ML methods were used to develop the prediction models. Both knowledge‐driven and data‐driven approaches were explored. Four computable phenotyping algorithms were tested.Results: The gradient boosting tree (GBT) models trained with the data‐driven approach achieved the best area under the curve (AUC) scores of 0.939, 0.906, 0.884, and 0.854 for early prediction of ADRD 0, 1, 3, or 5 years before diagnosis, respectively. A number of important clinical and sociodemographic factors were identified.Discussion: We tested various settings and showed the predictive ability of using ML approaches for early prediction of ADRD with EHRs. The models can help identify high‐risk individuals for early informed preventive or prognostic clinical decisions.

14 June 2025 in npj Digital Medicine
Verified
Journal Article
Open access
PDF file
MLMingxuan Liu
Mingxuan Liu
YNYilin Ning
Yilin Ning
STSalinelat Teixayavong
Salinelat Teixayavong
XLXiaoxuan Liu
Xiaoxuan Liu
MMMayli Mertens
Mayli Mertens
Nan LiuNan Liu
Nan Liu
The ethical integration of artificial intelligence (AI) in healthcare necessitates addressing fairness. AI fairness involves mitigating biases in AI and leveraging AI to promote equity. Despite advancements, significant disconnects persist between technical solutions and clinical applications. Through evidence gap analysis, this review systematically pinpoints the gaps at the intersection of healthcare contexts—including medical fields, healthcare datasets, and bias-relevant attributes (e.g., gender/sex)—and AI fairness techniques for bias detection, evaluation, and mitigation. We highlight the scarcity of AI fairness research in medical domains, the narrow focus on bias-relevant attributes, the dominance of group fairness centering on model performance equality, and the limited integration of clinician-in-the-loop to improve AI fairness. To bridge the gaps, we propose actionable strategies for future research to accelerate the development of AI fairness in healthcare, ultimately advancing equitable healthcare delivery.

27 August 2021 in IEEE Transactions on Pattern Analysis and Machine Intelligence
Verified
Journal Article
Closed access
Jie XuJie Xu
Jie Xu
WZWei Zhang
Wei Zhang
FWFei Wang
Fei Wang
As deep learning models are usually massive and complex, distributed learning is essential for increasing training efficiency. Moreover, in many real-world application scenarios like healthcare, distributed learning can also keep the data local and protect privacy. Recently, the asynchronous decentralized parallel stochastic gradient descent (ADPSGD) algorithm has been proposed and demonstrated to be an efficient and practical strategy where there is no central server, so that each computing node only communicates with its neighbors. Although no raw data will be transmitted across different local nodes, there is still a risk of information leak during the communication process for malicious participants to make attacks. In this paper, we present a differentially private version of asynchronous decentralized parallel SGD framework, or A(DP) $^2$ SGD for short, which maintains communication efficiency of ADPSGD and prevents the inference from malicious participants. Specifically, Rényi differential privacy is used to provide tighter privacy analysis for our composite Gaussian mechanisms while the convergence rate is consistent with the non-private version. Theoretical analysis shows A(DP) $^2$ SGD also converges at the optimal $\mathcal {O}(1/\sqrt{T})$ rate as SGD. Empirically, A(DP) $^2$ SGD achieves comparable model accuracy as the differentially private version of Synchronous SGD (SSGD) but runs much faster than SSGD in heterogeneous computing environments.

10 September 2020 in Learning Health Systems
Verified
Journal Article
Open access
PDF file
Jie XuJie Xu
Jie Xu
FWFei Wang
Fei Wang
ZXZhenxing Xu
Zhenxing Xu
PAPrakash Adekkanattu
Prakash Adekkanattu
PBPascal Brandt
Pascal Brandt
JPJyotishman Pathak
Jyotishman Pathak
Introduction: We sought to assess longitudinal electronic health records (EHRs) using machine learning (ML) methods to computationally derive probable Alzheimer's Disease (AD) and related dementia subphenotypes.Methods: A retrospective analysis of EHR data from a cohort of 7587 patients seen at a large, multi‐specialty urban academic medical center in New York was conducted. Subphenotypes were derived using hierarchical clustering from 792 probable AD patients (cases) who had received at least one diagnosis of AD using their clinical data. The other 6795 patients, labeled as controls, were matched on age and gender with the cases and randomly selected in the ratio of 9:1. Prediction models with multiple ML algorithms were trained on this cohort using 5‐fold cross‐validation. XGBoost was used to rank the variable importance.Results: Four subphenotypes were computationally derived. Subphenotype A (n = 273; 28.2%) had more patients with cardiovascular diseases; subphenotype B (n = 221; 27.9%) had more patients with mental health illnesses, such as depression and anxiety; patients in subphenotype C (n = 183; 23.1%) were overall older (mean (SD) age, 79.5 (5.4) years) and had the most comorbidities including diabetes, cardiovascular diseases, and mental health disorders; and subphenotype D (n = 115; 14.5%) included patients who took anti‐dementia drugs and had sensory problems, such as deafness and hearing impairment.The 0‐year prediction model for AD risk achieved an area under the receiver operating curve (AUC) of 0.764 (SD: 0.02); the 6‐month model, 0.751 (SD: 0.02); the 1‐year model, 0.752 (SD: 0.02); the 2‐year model, 0.749 (SD: 0.03); and the 3‐year model, 0.735 (SD: 0.03), respectively. Based on variable importance, the top‐ranked comorbidities included depression, stroke/transient ischemic attack, hypertension, anxiety, mobility impairments, and atrial fibrillation. The top‐ranked medications included anti‐dementia drugs, antipsychotics, antiepileptics, and antidepressants.Conclusions: Four subphenotypes were computationally derived that correlated with cardiovascular diseases and mental health illnesses. ML algorithms based on patient demographics, diagnosis, and treatment demonstrated promising results in predicting the risk of developing AD at different time points across an individual's lifespan.