Machine learning (ML) methods are proliferating in scientific research. However, the adoption of these methods has been accompanied by failures of validity, reproducibility, and generalizability. These failures can hinder scientific progress, lead to false consensus around invalid claims, and undermine the credibility of ML-based science. ML methods are often applied and fail in similar ways across disciplines. Motivated by this observation, our goal is to provide clear recommendations for conducting and reporting ML-based science. Drawing from an extensive review of past literature, we present the REFORMS checklist (recommendations for machine-learning-based science). It consists of 32 questions and a paired set of guidelines. REFORMS was developed on the basis of a consensus of 19 researchers across computer science, data science, mathematics, social sciences, and biomedical sciences. REFORMS can serve as a resource for researchers when designing and implementing a study, for referees when reviewing papers, and for journals when enforcing standards for transparency and reproducibility.
27 January 2025 in Proceedings of the National Academy of Sciences
What is wrong with the peer review system? Is peer review sustainable? Useful? What other models exist? These are central yet contentious questions in today’s academic discourse. This perspective critically discusses alternative models and revisions to the peer review system. The authors highlight possible changes to the peer review system, with the goal of fostering further dialog among the main stakeholders, including producers and consumers of scientific research. Neither our list of identified issues with the peer review system nor our discussed resolutions are complete. A point of agreement is that fair assessment and efficient change would require more comprehensive and rigorous data on the various aspects of the peer review system.
29 March 2021 in Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences
Reproducibility is a confused terminology. In this paper, I take a fundamental view on reproducibility rooted in the scientific method. The scientific method is analysed and characterized in order to develop the terminology required to define reproducibility. Furthermore, the literature on reproducibility and replication is surveyed, and experiments are modelled as tasks and problem solving methods. Machine learning is used to exemplify the described approach. Based on the analysis, reproducibility is defined and three different degrees of reproducibility as well as four types of reproducibility are specified. This article is part of the theme issue ‘Reliability and reproducibility in computational science: implementing verification, validation and uncertainty quantification in silico ’.
1 January 2022 in Future Generation Computer Systems
Whenever natural and human-made disasters strike, the proper response of the concerned authorities often relies on search and rescue services. Search and rescue services are complex multidisciplinary processes that involve several degrees of interdependent assignments. To handle such complexity, decision support systems are used for decision-making and execution of plans within search and rescue operations. Advances in data management solutions and artificial intelligence technologies have provided better opportunities to make more efficient and effective decisions that can lead to improved search and rescue operations. This paper provides findings from a bibliometric mapping and a systematic literature review performed to: (1) identify existing search and rescue processes that use decision support systems, data management solutions, and artificial intelligence technologies; (2) do a comprehensive analysis of existing solutions in terms of their research contributions to the investigated domain; and (3) investigate the potential for knowledge transfer between application areas. The main findings of this review are that non-conventional data management solutions are commonly used in land rescue operations and that geographical information systems have been integrated with various machine learning approaches for land rescue. However, there is a gap in the existing research on search and rescue decision support at sea, which can motivate future studies within this specific application area.
This paper addresses the evaluation of multi-step point forecasting models. Currently, deep learning models for multi-step forecasting are evaluated on datasets by selecting one error metric that is aggregated across the time series and the forecast horizon. This approach hides insights that would otherwise be useful for practitioners when evaluating and selecting forecasting models. We propose four novel metrics to provide additional insights when evaluating models: 1) a win-loss metric that shows how models perform across time series in the dataset , allowing the practitioner to check whether the model is superior for all series or just a subset of series. 2) a variance weighted metric that accounts for differences in variance across the seasonal period. It can be used to evaluate models for seasonal datasets such as rush hour traffic prediction, where it is desirable to select the model that performs best during the periods of high uncertainty. 3) a delta horizon metric measuring how much models update their forecast for a period in the future over the forecast horizon. Less change to the forecast means more stability over time and is desirable for most forecasting applications. 4) decomposed errors that relate the forecasting error to trend, seasonality, and noise. Decomposing the errors allows the practitioners to identify for which components the model is making more errors and adjust the model accordingly. To show the applicability of the proposed metrics, we implement four deep learning architectures and conduct experiments on five benchmark datasets. We highlight several use cases for the proposed metrics and discuss the applicability in light of the empirical results.