Katarzyna Ratajczak

Dr. Katarzyna Ratajczak

Department of Physics and Biophysics, Warsaw University of Life Sciences, Warsaw, Mazowieckie, Poland
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Research Focus & Metrics

Academic Career Length

10Years (2017-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 February 2020 in Carbohydrate Polymers
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Journal Article
Open access
KRKatarzyna Ratajczak
Katarzyna Ratajczak
MSMagdalena Stobiecka
Magdalena Stobiecka
A remarkable progress in the development of portable paper-based biosensors (PBBs) and microfluidic paper-based analytical devices (μPADs) has recently been achieved. In these devices, a paper formed of microfibers of cellulose, a carbohydrate biopolymer, offers both an ample space in its micropores for analytical reagents storage and a capillary force to drive liquid samples to a dedicated reaction zone for instantaneous detection of the desired analytes. Owing to the low cost and ultra-high sensitivity, these novel devices have become a promising alternative to traditional advanced analytical instruments and offer great potential for applications in medical emergencies, health diagnostics at points-of-care, and broad early-cancer screening. In this review, we focus particularly on recent important achievements in utilization of cellulose and its modifications in portable sensing devices for biomedical applications. The progress in functionalization of cellulose papers with antibodies, nucleic acids and nanomaterials in PBBs and μPADs, is discussed and critically evaluated.

Verified
Journal Article
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Hubert GrelHubert Grel
Hubert Grel
DWDamian Woznica
Damian Woznica
KRKatarzyna Ratajczak
Katarzyna Ratajczak
EKEwelina Kalwarczyk
Ewelina Kalwarczyk
JAJulia Anchimowicz
Julia Anchimowicz
Slawomir JakielaSlawomir Jakiela
Slawomir Jakiela
Neurodegenerative diseases (NDs) are a diverse group of disorders characterized by the progressive degeneration and death of neurons, leading to a range of neurological symptoms. Despite the heterogeneity of these conditions, a common denominator is the implication of mitochondrial dysfunction in their pathogenesis. Mitochondria play a crucial role in creating biomolecules, providing energy through adenosine triphosphate (ATP) generated by oxidative phosphorylation (OXPHOS), and producing reactive oxygen species (ROS). When they’re not functioning correctly, becoming fragmented and losing their membrane potential, they contribute to these diseases. In this review, we explore how mitochondria fuse and undergo fission, especially in the context of NDs. We discuss the genetic and protein mutations linked to these diseases and how they impact mitochondrial dynamics. We also look at the key regulatory proteins in fusion (MFN1, MFN2, and OPA1) and fission (DRP1 and FIS1), including their post-translational modifications. Furthermore, we highlight potential drugs that can influence mitochondrial dynamics. By unpacking these complex processes, we aim to direct research towards treatments that can improve life quality for people with these challenging conditions.


9 July 2018 in Nanomaterials
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KRKatarzyna Ratajczak
Katarzyna Ratajczak
BKBartlomiej Emil Krazinski
Bartlomiej Emil Krazinski
AKAnne E. Kowalczyk
Anne E. Kowalczyk
BDBeata Dworakowska
Beata Dworakowska
Slawomir JakielaSlawomir Jakiela
Slawomir Jakiela
MSMagdalena Stobiecka
Magdalena Stobiecka
The anti-apoptotic protein survivin is one of the most promising cancer biomarkers owing to its high expression in human cancers and rare occurrence in normal adult tissues. In this work, we have investigated the role of supramolecular interactions between a graphene oxide (GO) nanosheet nanocarrier and a survivin molecular beacon (SurMB), functionalized by attaching fluorophore Joe and quencher Dabcyl (SurMB-Joe). Molecular dynamics simulations revealed hydrogen bonding of Joe moiety and Dabcyl to GO carriers that considerably increase the SurMB-GO bonding strength. This was confirmed in experimental work by the reduced fluorescence background in the OFF state, thereby increasing the useful analytical signal range for mRNA detection. A new mechanism of hairpin–hairpin interaction of GO@SurMB with target oligonucleotides has been proposed. A low limit of detection, LOD = 16 nM (S/N = 3), has been achieved for complementary tDNA using GO@SurMB-Joe nanocarriers. We have demonstrated an efficient internalization of SurMB-Joe-loaded GO nanocarriers in malignant SW480 cells. The proposed tunability of the bonding strength in the attached motifs for MBs immobilized on nanocarriers, via structural modifications, should be useful in gene delivery systems to enhance the efficacy of gene retention, cell transfection and genomic material survivability in the cellular environment.

24 April 2018 in ACS Applied Materials & Interfaces
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Journal Article
Closed access
KRKatarzyna Ratajczak
Katarzyna Ratajczak
BKBartlomiej Emil Krazinski
Bartlomiej Emil Krazinski
AKAnne E. Kowalczyk
Anne E. Kowalczyk
BDBeata Dworakowska
Beata Dworakowska
Slawomir JakielaSlawomir Jakiela
Slawomir Jakiela
MSMagdalena Stobiecka
Magdalena Stobiecka

12 August 2019 in Analytical and Bioanalytical Chemistry
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Journal Article
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KRKatarzyna Ratajczak
Katarzyna Ratajczak
ALAgnieszka Lukasiak
Agnieszka Lukasiak
Hubert GrelHubert Grel
Hubert Grel
BDBeata Dworakowska
Beata Dworakowska
Slawomir JakielaSlawomir Jakiela
Slawomir Jakiela
MSMagdalena Stobiecka
Magdalena Stobiecka
Adenosine triphosphate (ATP) is the main energy source in cells and an important biomolecule participating in cellular reactions in living organisms. Since the ATP level changes dynamically reflecting the development of a debilitating disease or carcinogenesis, we have focused in this work on monitoring of the oligomycin (OMC)-modulated ATP synthase inhibition using a fluorescent-switching DNA aptamer designed for the detection of ATP (Apt(ATP)), as the model for studies of dynamic ATP level variation. The behavior of the ATP aptamer has been characterized using fluorescence spectroscopy. The Intramolecular fluorescence resonance energy transfer (iFRET) operates in the proposed aptamer from the FAM dye moiety to guanines of the aptamer G-quadruplex when the target ATP is present and binds to the aptamer changing its conformation. The iFRET process enables the detection of ATP down to the limit of detection, LOD = 17 μM, without resorting to any extra chemi-amplification schemes. The selectivity coefficients for relevant interferent triphosphates (UTP, GTP, and CTP) are low for the same concentration as that of ATP. We have demonstrated an efficient transfection of intact cells and OMC-treated SW480 colon cancer cells with Apt(ATP), using microscopic imaging, iFRET measurements, and cell viability testing with MTT method. The applicability of the switching DNA aptamer for the analysis of real samples, obtained by lysis of SW480 cells, was also tested. The proposed Apt(ATP) may be considered as a viable candidate for utilization in measurements of dynamic ATP level modulation in cells in different stages of cancer development and testing of new drugs in pharmacological studies. Graphical abstract