Shun'ichi Ishii

Dr. Shun'ichi Ishii

orcid

Research Focus & Metrics

Academic Career Length

26Years (2001-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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25 July 2006 in Proceedings of the National Academy of Sciences
Verified
Journal Article
Closed access
YGYuri A. Gorby
Yuri A. Gorby
SYSvetlana Yanina
Svetlana Yanina
JMJeffrey Scott McLean
Jeffrey Scott McLean
KRKevin M. Rosso
Kevin M. Rosso
DMDianne Moyles
Dianne Moyles
JFJim K. Fredrickson
Jim K. Fredrickson
Shewanella oneidensis MR-1 produced electrically conductive pilus-like appendages called bacterial nanowires in direct response to electron-acceptor limitation. Mutants deficient in genes for c -type decaheme cytochromes MtrC and OmcA, and those that lacked a functional Type II secretion pathway displayed nanowires that were poorly conductive. These mutants were also deficient in their ability to reduce hydrous ferric oxide and in their ability to generate current in a microbial fuel cell. Nanowires produced by the oxygenic phototrophic cyanobacterium Synechocystis PCC6803 and the thermophilic, fermentative bacterium Pelotomaculum thermopropionicum reveal that electrically conductive appendages are not exclusive to dissimilatory metal-reducing bacteria and may, in fact, represent a common bacterial strategy for efficient electron transfer and energy distribution.

1 December 2005 in Applied and Environmental Microbiology
Verified
Journal Article
Closed access
PDF file
SIShun'ichi Ishii
Shun'ichi Ishii
TKTommoyuki Kosaka
Tommoyuki Kosaka
Katsutoshi HoriKatsutoshi Hori
Katsutoshi Hori
YHYasuaki Hotta
Yasuaki Hotta
KWKazuya Watanabe
Kazuya Watanabe
A thermophilic syntrophic bacterium,Pelotomaculum thermopropionicumstrain SI, was grown in a monoculture or coculture with a hydrogenotrophic methanogen,Methanothermobacter thermautotrophicusstrain ΔH. Microscopic observation revealed that cells of each organism were dispersed in a monoculture independent of the growth substrate. In a coculture, however, these organisms coaggregated to different degrees depending on the substrate; namely, a large fraction of the cells coaggregated when they were grown on propionate, but relatively few cells coaggregated when they were grown on ethanol or 1-propanol. Field emission-scanning electron microscopy revealed that flagellum-like filaments of SI cells played a role in making contact with ΔH cells. Microscopic observation of aggregates also showed that extracellular polymeric substance-like structures were present in intercellular spaces. In order to evaluate the importance of coaggregation for syntrophic propionate oxidation, allowable average distances between SI and ΔH cells for accomplishing efficient interspecies hydrogen transfer were calculated by using Fick's diffusion law. The allowable distance for syntrophic propionate oxidation was estimated to be approximately 2 μm, while the allowable distances for ethanol and propanol oxidation were 16 μm and 32 μm, respectively. Considering that the mean cell-to-cell distance in the randomly dispersed culture was approximately 30 μm (at a concentration in the mid-exponential growth phase of the coculture of 5 × 107cells ml−1), it is obvious that close physical contact of these organisms by coaggregation is indispensable for efficient syntrophic propionate oxidation.

26 January 2024 in Nature Communications
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Journal Article
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TOTaku Omura
Taku Omura
NINoriyuki Isobe
Noriyuki Isobe
TMTakamasa Miura
Takamasa Miura
SIShun'ichi Ishii
Shun'ichi Ishii
MMMihoko Mori
Mihoko Mori
TITadahisa Iwata
Tadahisa Iwata
Microbes can decompose biodegradable plastics on land, rivers and seashore. However, it is unclear whether deep-sea microbes can degrade biodegradable plastics in the extreme environmental conditions of the seafloor. Here, we report microbial decomposition of representative biodegradable plastics (polyhydroxyalkanoates, biodegradable polyesters, and polysaccharide esters) at diverse deep-sea floor locations ranging in depth from 757 to 5552 m. The degradation of samples was evaluated in terms of weight loss, reduction in material thickness, and surface morphological changes. Poly(l-lactic acid) did not degrade at either shore or deep-sea sites, while other biodegradable polyesters, polyhydroxyalkanoates, and polysaccharide esters were degraded. The rate of degradation slowed with water depth. We analysed the plastic-associated microbial communities by 16S rRNA gene amplicon sequencing and metagenomics. Several dominant microorganisms carried genes potentially encoding plastic-degrading enzymes such as polyhydroxyalkanoate depolymerases and cutinases/polyesterases. Analysis of available metagenomic datasets indicated that these microorganisms are present in other deep-sea locations. Our results confirm that biodegradable plastics can be degraded by the action of microorganisms on the deep-sea floor, although with much less efficiency than in coastal settings.

1 December 2008 in Applied and Environmental Microbiology
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Journal Article
Closed access
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SIShun'ichi Ishii
Shun'ichi Ishii
KWKazuya Watanabe
Kazuya Watanabe
SYSoichi Yabuki
Soichi Yabuki
BLBruce E. Logan
Bruce E. Logan
YSYuji Sekiguchi
Yuji Sekiguchi
An electricity-generating bacterium, Geobacter sulfurreducens PCA, was inoculated into a single-chamber, air-cathode microbial fuel cell (MFC) in order to determine the maximum electron transfer rate from bacteria to the anode. To create anodic reaction-limiting conditions, where electron transfer from bacteria to the anode is the rate-limiting step, anodes with electrogenic biofilms were reduced in size and tests were conducted using anodes of six different sizes. The smallest anode (7 cm 2 , or 1.5 times larger than the cathode) achieved an anodic reaction-limiting condition as a result of a limited mass of bacteria on the electrode. Under these conditions, the limiting current density reached a maximum of 1,530 mA/m 2 , and power density reached a maximum of 461 mW/m 2 . Per-biomass efficiency of the electron transfer rate was constant at 32 fmol cell −1 day −1 (178 μmol g of protein −1 min −1 ), a rate comparable to that with solid iron as the electron acceptor but lower than rates achieved with fumarate or soluble iron. In comparison, an enriched electricity-generating consortium reached 374 μmol g of protein −1 min −1 under the same conditions, suggesting that the consortium had a much greater capacity for electrode reduction. These results demonstrate that per-biomass electrode reduction rates (calculated by current density and biomass density on the anode) can be used to help make better comparisons of electrogenic activity in MFCs.

19 March 2013 in Nature Communications
Verified
Journal Article
Closed access
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SIShun'ichi Ishii
Shun'ichi Ishii
SSShino Suzuki
Shino Suzuki
TNTrina M. Norden-Krichmar
Trina M. Norden-Krichmar
ATAaron Tenney
Aaron Tenney
PCpatrick chain
patrick chain
OBOrianna Bretschger
Orianna Bretschger

10 January 2008 in BMC Microbiology
Verified
Journal Article
Open access
PDF file
SIShun'ichi Ishii
Shun'ichi Ishii
TSTakefumi Shimoyama
Takefumi Shimoyama
YHYasuaki Hotta
Yasuaki Hotta
KWKazuya Watanabe
Kazuya Watanabe
Background: Microbial fuel cells (MFCs) are devices that exploit microorganisms to generate electric power from organic matter. Despite the development of efficient MFC reactors, the microbiology of electricity generation remains to be sufficiently understood. Results: A laboratory-scale two-chamber microbial fuel cell (MFC) was inoculated with rice paddy field soil and fed cellulose as the carbon and energy source. Electricity-generating microorganisms were enriched by subculturing biofilms that attached onto anode electrodes. An electric current of 0.2 mA was generated from the first enrichment culture, and ratios of the major metabolites (e.g., electric current, methane and acetate) became stable after the forth enrichment. In order to investigate the electrogenic microbial community in the anode biofilm, it was morphologically analyzed by electron microscopy, and community members were phylogenetically identified by 16S rRNA gene clone-library analyses. Electron microscopy revealed that filamentous cells and rod-shaped cells with prosthecae-like filamentous appendages were abundantly present in the biofilm. Filamentous cells and appendages were interconnected via thin filaments. The clone library analyses frequently detected phylotypes affiliated with Clostridiales, Chloroflexi, Rhizobiales and Methanobacterium. Fluorescence in-situ hybridization revealed that the Rhizobiales population represented rod-shaped cells with filamentous appendages and constituted over 30% of the total population. Conclusion: Bacteria affiliated with the Rhizobiales constituted the major population in the cellulose-fed MFC and exhibited unique morphology with filamentous appendages. They are considered to play important roles in the cellulose-degrading electrogenic community.