Pomacea canaliculata is an important invasive species worldwide. However, little is known about the molecular mechanisms behind species displacement, adaptational abilities, and pesticide resistance, partly because of the lack of genomic information that is available for this species. Here, the transcriptome sequences for the invasive golden apple snail P. canaliculata and the native mudsnail Cipangopaludina cahayensis were obtained by next-generation-sequencing and used to compare genomic divergence and identify molecular markers. More than 46 million high quality sequencing reads were generated from P. canaliculata and C. cahayensis using Illumina paired-end sequencing technology. Our analysis indicated that 11,312 unigenes from P. canaliculata and C. cahayensis showed significant similarities to known proteins families, among which a total of 4,320 specific protein families were identified. KEGG pathway enrichment was analyzed for the unique unigenes with 17 pathways (p-value < 10−5) in P. canaliculata relating predominantly to lysosomes and vitamin digestion and absorption, and with 12 identified in C. cahayensis, including cancer and toxoplasmosis pathways, respectively. Our analysis also indicated that the comparatively high number of P450 genes in the P. canaliculata transcriptome may be associated with the pesticide resistance in this species. Additionally, 16,717 simple sequence repeats derived from expressed sequence tags (EST-SSRs) were identified from the 14,722 unigenes in P. canaliculata and 100 of them were examined by PCR, revealing a species-specific molecular marker that could distinguish between the morphologically similar P. canaliculata and C. cahayensis snails. Here, we present the genomic resources of P. canaliculata and C. cahayensis. Differentially expressed genes in the transcriptome of P. canaliculata compared with C. cahayensis corresponded to critical metabolic pathways, and genes specifically related to environmental stress response were detected. The CYP4 family of P450 cytochromes that may be important factors in pesticide metabolism in P. canaliculata was identified. Overall, these findings will provide valuable genetic data for the further characterization of the molecular mechanisms that support the invasive and adaptive abilities of P. canaliculata.

The distribution of saline-alkali water is extensive and is increasing globally each year. Fully utilizing saline-alkali water for aquaculture can help alleviate the scarcity of freshwater resources in global fisheries. As a major economic fish species, the largemouth bass (Micropterus salmoides) holds significant potential for aquaculture in saline-alkali water. In the present study, we evaluated its tolerance to different salinities (0 ppt, 6 ppt, 9 ppt, 12 ppt, 15 ppt, and 18 ppt) and investigated tissue pathology, serum biochemical indicators, enzyme activities of osmolality and antioxidant, and the relative expression of Na-K-2Cl 1a cotransporter (NKCC1a) under different saline stress (0 ppt, 6 ppt, 9 ppt, and 12 ppt). The largemouth bass 96 h mortality rate increased with increasing salinity, and the LC₅₀ for 96 h was 14.28 ppt based on the mortality results. High salinity group (12 ppt) caused gill and intestinal damage, including necrosis and cell shedding, while 6 ppt had no adverse effects, and the 9 ppt between the two salinities showed an adaptive change histologically. Serum osmolality, Na⁺, Cl⁻, and cortisol levels of the high salinity group were significantly higher than of the low salinities (p < 0.05). Similarly, Na⁺/K⁺-ATPase (NKA), Ca²⁺-Mg²⁺-ATPase (CMA), and superoxide dismutase (SOD) activities of 12 ppt peaked at 24 h (15.7 U/mgprot, 11.5 U/mgprot, and 243 U/mgprot), which is significantly different compared to the other three groups (p < 0.05). The expression of NKCC1a was significantly upregulated at 9 ppt and 12 ppt, suggesting its role in osmoregulation. Furthermore, the expression of NKCC1a in the gill is 2–4 times higher than that in the intestine. These results suggested that largemouth bass can be cultured at 6 ppt and selectively bred for tolerance at 9 ppt. NKA activity, cortisol levels, and NKCC1a expression can be used as a marker of salinity suitability. These findings provide insight into the adaptive mechanisms underlying the physiological responses to acute salinity stress and will contribute to improving aquaculture in saline waters.