Fruit planting plays an essential role in achieving zero hunger, ensuring food security, and increasing the income of local people. As one of China’s principal fruit-planting areas, southern Xinjiang possesses more than 80% of the total fruit-planting areas of Xinjiang. However, the spatial distribution, extent, and types of fruit trees remain unknown, generating uncertainty in calculating the economic benefits of orchards in this area. In this paper, we used walnut and jujube orchards under fruit tree–crop intercropping conditions in the Hotan Oasis in southern Xinjiang as the research object. Walnut and jujube orchards were precisely characterized using object-oriented and decision tree classification methods. Then, the economic benefits for farmers were estimated based on field surveys and statistical data. From 2003 to 2020, the area of jujube orchards rapidly increased from 1.91 × 10³ ha to 33.59 × 10³ ha, while that of walnut orchards steadily increased from 18.05 × 10³ ha to 40.24 × 10³ ha. The expansion areas of walnut orchards were mainly transformed from other orchards in the oasis, while the expansion areas of jujube orchards mainly originated from newly cultivated land in the desert. The increases in areas and yields largely offset the increase in planting costs and the decrease in purchase prices, resulting in an increasing trend in the total net income of the orchards. From 2003 to 2020, the total net income of walnut orchards increased by 68.96%, and the total net income of jujube orchards significantly increased by 23.37 times. However, the output/input ratios of walnut orchards under intercropping conditions were approximately two times higher than those of jujube orchards under monocropping conditions. The increase in investment slightly offset the decreases in yields and purchase prices, resulting in increases of 5.24% and 18.64% in the output/input ratios of walnuts and jujubes, respectively, in orchards exhibiting standardized cultivation. In the future, it is necessary to significantly expand the area of orchards involving standardized cultivation and improve the yield and quality of fruits, thereby increasing the yields and income levels of local farmers.

Prunus tenella is a rare and precious relict plant in China. It is an important genetic resource for almond improvement and an indispensable material in ecological protection and landscaping. However, the research into molecular breeding and genetic evolution has been severely restricted due to the lack of genome information. In this investigation, we created a chromosome-level genomic pattern of P. tenella, 231 Mb in length with a contig N50 of 18.1 Mb by Hi-C techniques and high-accuracy PacBio HiFi sequencing. The present assembly predicted 32,088 protein-coding genes, and an examination of the genome assembly indicated that 94.7% among all assembled transcripts were alignable to the genome assembly; most (97.24%) were functionally annotated. By phylogenomic genome comparison, we found that P. tenella is an ancient group that diverged approximately 13.4 million years ago (mya) from 13 additional closely related species and about 6.5 Mya from the cultivated almond. Collinearity analysis revealed that P. tenella is highly syntenic and has high sequence conservation with almond and peach. However, this species also exhibits many presence/absence variants. Moreover, a large inversion at the 7588 kb position of chromosome 5 was observed, which may have a significant association with phenotypic traits. Lastly, population genetic structure analysis in eight different populations indicated a high genetic differentiation among the natural distribution of P. tenella. This high-quality genome assembly provides critical clues and comprehensive information for the systematic evolution, genetic characteristics, and functional gene research of P. tenella. Moreover, it provides a valuable genomic resource for in-depth study in protection, developing, and utilizing P. tenella germplasm resources.