Agarose is known to form a homogeneous thermoreversible gel in an aqueous medium over a critical polymer concentration. The solid-liquid phase transitions are thermoreversible but depend on the molecular structure of the agarose sample tested. The literature has mentioned that agarose gels could remain stable in non-solvents such as acetone or ethanol. However, there has been no characterization of their behavior nor a comparison with the gels formed in a good solvent such as water. In the first step of this article, the structure was characterized using 1H and 13C NMR in both D2O and DMSO-d6 solvents. DMSO is a solvent that dissolves agarose regardless of the temperature. First, we have determined a low yield of methyl substitution on the D-galactose unit. Then, the evolution of the 1H NMR spectrum was monitored as a function of temperature during both increasing and decreasing temperature processes, ranging from 25 to 80 °C. A large thermal hysteresis was obtained and discussed, which aided in the interpretation of rheological behavior. The hysteresis of NMR signals is related to the mobility of the agarose chains, which follows the sol/gel transition depending on the chains’ association with H-bonds between water and the -OH groups of agarose for tightly bound water and agarose/agarose in chain packing. In the second step of the study, the water in the agarose gel was exchanged with ethanol, which is a non-solvent for agarose. The resulting gel was stable, and its properties were characterized using rheology and compared to its behavior in aqueous media. The bound water molecules that act as plasticizers were likely removed during the exchange process, resulting in a stronger and more brittle gel in ethanol, with higher thermal stability compared to the aqueous gel. It is the first time that such gel is characterized without phase transition when passing from a good solvent to a non-solvent. This extends the domains of application of agarose.
Agarose forms a homogeneous thermoreversible gel in an aqueous solvent above a critical polymer concentration. Contrary to the prevailing consensus, recent confirmations indicate that agarose gels are also stable in non-solvents like acetone and ethanol. A previous study compared gel characterisations and behaviours in water and ethanol, discussing the gelation mechanism. In the current work, the ethanol gel is exchanged with water to explore the potential reversibility of the displacement of water in agarose. Initially, the structure is characterised using 1H NMR in DMSO-d6 and D2O solvents. Subsequently, a very low yield (0.04) of methyl substitution per agarobiose unit is determined. The different gels after stabilisation are characterised using rheology, and their physical properties are compared based on the solvent used. The bound water molecules, acting as plasticizers in aqueous medium, are likely removed during the exchange process with ethanol, resulting in a stronger and more fragile gel. Next, the gel obtained after the second exchange from ethanol back to water is compared with the initial gel prepared in water. This is the first time where such gel has been characterised without undergoing a phase transition when switching from a good solvent to a non-solvent, and vice versa, thereby testing the reversibility of the solvent exchange. Reversibility of this behaviour is demonstrated through swelling and rheology experiments. This study extends the application of agarose in chromatography and electrophoresis.
To investigate the interplay between microscopic dynamics and macroscopic rheology in soft matter, we couple a stress-controlled-rheometer equipped with a Couette cell to a light scattering setup in the imaging geometry, which allows us to measure both the deformation field and the microscopic dynamics. To validate our setup, we test two model systems. For an elastic solid sample, we recover the expected deformation field within 1 µ m. For a pure viscous fluid seeded with tracer particles, we measure the velocity profile and the dynamics of the tracers, both during shear and at rest. The velocity profile is acquired over a gap of 5 mm with a temporal and spatial resolution of 1 s and 100 µ m, respectively. At rest, the tracer dynamics have the expected diffusive behavior. Under shear, the microscopic dynamics corrected for the average drift due to solid rotation scale with the local shear rate, demonstrating that our setup captures correctly the relative motion of the tracers due to the affine deformation.
In this work, purified pectins from Araçá fruits (Psidium cattleianum Sabine) were obtained and characterized after partial demethylation. On each prepared sample, the carboxylic yield was obtained by titration, the degree of methylation (DM) by 1H-NMR, and the molecular weight distribution by steric exclusion chromatography (SEC). Then, the gelation ability in the presence of calcium counterions was investigated and related to DM (59–0%); the pectin concentration (2–10 g L−1); and the CaCl2 concentration (0.1–1 mol L−1) used for dialysis. The critical pectin concentration for homogeneous gelation was above 2 g L−1 when formed against 1 mol L−1 CaCl2. The elastic modulus (G′) increased with pectin concentration following the relationship G′~C2.8 in agreement with rigid physical gel network predictions. The purified samples APP and APP-A with DM ≥ 40% in the same conditions released heterogeneous systems formed of large aggregates. Gels formed against lower concentrations of CaCl2 down to 0.1 mol L−1 had a higher degree of swelling, indicating electrostatic repulsions between charged chains, thus, counterbalancing the Ca2+ cross-linkage. Compression/traction experiments demonstrated that an irreversible change in the gel structure occurred during small compression with an enhancement of the G′ modulus.
Recent studies on semi-dilute Calf-Thymus DNA (CT-DNA) solutions have revealed the presence of birefringence and small-scale textures influenced by shear and ionic strength. In this study, we investigate these phenomena on the same solutions to elucidate the underlying shear-induced supramolecular organization and relaxation dynamics using rheo-birefringence, rheology, and rheo-SAXS (small-angle X-ray scattering). Static SAXS confirmed concentration-dependent inter-chain correlations in the 15–25 nm range, while rheology revealed a slipping yield-stress behavior. Oscillatory strain sweep and steady state rheo-birefringence experiments correlated the appearance of textures with the onset of flow and a stress plateau observed over a shear rate range from approximately 1 to 1000 s−1. Transient rheo-birefringence and rheo-SAXS revealed two distinct relaxation mechanisms on well-separated time scales: a fast process lasting a few seconds, inversely proportional to the shear rate, consistent with the orientational relaxation of DNA segments on a ~20 nm scale; and a slower relaxation over tens of seconds, independent of the shear rate, associated with the disappearance of textures, and attributed to a diffusive process. These findings provide significant insights into the mechanisms governing DNA organization and dynamics in semi-dilute solutions under flow and highlight the need for temporally resolved start-up rheo-SAXS and rheo-birefringence measurements, as well as theoretical models describing these processes across various spatial and temporal scales.